==584057== Memcheck, a memory error detector ==584057== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==584057== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==584057== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==584057== Parent PID: 583813 ==584057== ==584057== ==584057== FILE DESCRIPTORS: 9 open (3 std) at exit. ==584057== Open file descriptor 12: ==584057== at 0x647E22D: pipe (pipe.c:29) ==584057== by 0xAF5E07D: ??? ==584057== by 0x8F7E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==584057== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584057== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584057== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==584057== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==584057== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==584057== by 0x125392: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==584057== by 0x11F1B5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==584057== by 0x121EAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==584057== by 0x121D4C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584057== by 0x1223E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584057== by 0x11D240: main (TestHdf5DataReader.cpp:19) ==584057== ==584057== Open file descriptor 8: /dev/shm/open_mpi.0000 ==584057== at 0x6482BCC: __open_nocancel (open64_nocancel.c:39) ==584057== by 0x6406C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==584057== by 0x5D49822: ??? ==584057== by 0x5D4996F: ??? ==584057== by 0x90236DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584057== by 0x9023938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584057== by 0x8FD9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584057== by 0x8F7E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==584057== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584057== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584057== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==584057== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==584057== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==584057== by 0x125392: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==584057== by 0x11F1B5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==584057== by 0x121EAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==584057== by 0x121D4C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584057== by 0x1223E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584057== by 0x11D240: main (TestHdf5DataReader.cpp:19) ==584057== ==584057== Open file descriptor 114: ==584057== ==584057== ==584057== Open file descriptor 111: ==584057== ==584057== ==584057== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==584057== ==584057== ==584057== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==584057== ==584057== ==584057== ==584057== HEAP SUMMARY: ==584057== in use at exit: 700,770 bytes in 9,387 blocks ==584057== total heap usage: 60,612 allocs, 51,225 frees, 1,363,749,015 bytes allocated ==584057== ==584057== LEAK SUMMARY: ==584057== definitely lost: 0 bytes in 0 blocks ==584057== indirectly lost: 0 bytes in 0 blocks ==584057== possibly lost: 0 bytes in 0 blocks ==584057== still reachable: 24 bytes in 2 blocks ==584057== suppressed: 700,746 bytes in 9,385 blocks ==584057== Reachable blocks (those to which a pointer was found) are not shown. ==584057== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==584057== ==584057== For lists of detected and suppressed errors, rerun with: -s ==584057== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 44 from 38)