==589997== Memcheck, a memory error detector ==589997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==589997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==589997== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==589997== Parent PID: 583813 ==589997== ==589997== ==589997== FILE DESCRIPTORS: 9 open (3 std) at exit. ==589997== Open file descriptor 12: ==589997== at 0xEE5922D: pipe (pipe.c:29) ==589997== by 0x188D707D: ??? ==589997== by 0x13EE34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==589997== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==589997== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==589997== by 0xF417D38: PetscInitialize (pinit.c:924) ==589997== by 0xE67558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==589997== by 0xE6755D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==589997== by 0x14102E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==589997== by 0x13A587: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==589997== by 0x13D31E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==589997== by 0x13D1BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==589997== by 0x13D855: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==589997== by 0x138880: main (TestOnLatticeSimulationWithPdes.cpp:19) ==589997== ==589997== Open file descriptor 8: /dev/shm/open_mpi.0000 ==589997== at 0xEE5DBCC: __open_nocancel (open64_nocancel.c:39) ==589997== by 0xEDE1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==589997== by 0xE6AD822: ??? ==589997== by 0xE6AD96F: ??? ==589997== by 0x13F886DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==589997== by 0x13F88938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==589997== by 0x13F3E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==589997== by 0x13EE32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==589997== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==589997== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==589997== by 0xF417D38: PetscInitialize (pinit.c:924) ==589997== by 0xE67558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==589997== by 0xE6755D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==589997== by 0x14102E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==589997== by 0x13A587: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==589997== by 0x13D31E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==589997== by 0x13D1BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==589997== by 0x13D855: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==589997== by 0x138880: main (TestOnLatticeSimulationWithPdes.cpp:19) ==589997== ==589997== Open file descriptor 114: ==589997== ==589997== ==589997== Open file descriptor 111: ==589997== ==589997== ==589997== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==589997== ==589997== ==589997== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==589997== ==589997== ==589997== ==589997== HEAP SUMMARY: ==589997== in use at exit: 700,770 bytes in 9,378 blocks ==589997== total heap usage: 2,341,037 allocs, 2,331,659 frees, 1,790,093,751 bytes allocated ==589997== ==589997== LEAK SUMMARY: ==589997== definitely lost: 0 bytes in 0 blocks ==589997== indirectly lost: 0 bytes in 0 blocks ==589997== possibly lost: 0 bytes in 0 blocks ==589997== still reachable: 56 bytes in 3 blocks ==589997== suppressed: 700,714 bytes in 9,375 blocks ==589997== Reachable blocks (those to which a pointer was found) are not shown. ==589997== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==589997== ==589997== For lists of detected and suppressed errors, rerun with: -s ==589997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)