==652401== Memcheck, a memory error detector ==652401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==652401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==652401== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==652401== Parent PID: 629821 ==652401== ==652401== Warning: invalid file descriptor -1 in syscall close() ==652401== ==652401== FILE DESCRIPTORS: 9 open (3 std) at exit. ==652401== Open file descriptor 12: ==652401== at 0xBE5F22D: pipe (pipe.c:29) ==652401== by 0x140D307D: ??? ==652401== by 0xFD944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==652401== by 0xB74F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==652401== by 0xB6E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==652401== by 0xA02AD38: PetscInitialize (pinit.c:924) ==652401== by 0x9E9A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==652401== by 0x9E9A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==652401== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==652401== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==652401== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==652401== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==652401== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==652401== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==652401== ==652401== Open file descriptor 8: /dev/shm/open_mpi.0000 ==652401== at 0xBE63BCC: __open_nocancel (open64_nocancel.c:39) ==652401== by 0xBDE7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==652401== by 0x9ED2822: ??? ==652401== by 0x9ED296F: ??? ==652401== by 0xFE396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==652401== by 0xFE39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==652401== by 0xFDEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==652401== by 0xFD942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==652401== by 0xB74F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==652401== by 0xB6E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==652401== by 0xA02AD38: PetscInitialize (pinit.c:924) ==652401== by 0x9E9A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==652401== by 0x9E9A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==652401== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==652401== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==652401== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==652401== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==652401== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==652401== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==652401== ==652401== Open file descriptor 114: ==652401== ==652401== ==652401== Open file descriptor 111: ==652401== ==652401== ==652401== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==652401== ==652401== ==652401== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==652401== ==652401== ==652401== ==652401== HEAP SUMMARY: ==652401== in use at exit: 701,166 bytes in 9,383 blocks ==652401== total heap usage: 6,602,547 allocs, 6,593,164 frees, 4,030,872,649 bytes allocated ==652401== ==652401== LEAK SUMMARY: ==652401== definitely lost: 0 bytes in 0 blocks ==652401== indirectly lost: 0 bytes in 0 blocks ==652401== possibly lost: 0 bytes in 0 blocks ==652401== still reachable: 24 bytes in 2 blocks ==652401== suppressed: 701,142 bytes in 9,381 blocks ==652401== Reachable blocks (those to which a pointer was found) are not shown. ==652401== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==652401== ==652401== For lists of detected and suppressed errors, rerun with: -s ==652401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)