==631775== Memcheck, a memory error detector ==631775== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==631775== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==631775== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==631775== Parent PID: 629821 ==631775== ==631775== ==631775== FILE DESCRIPTORS: 9 open (3 std) at exit. ==631775== Open file descriptor 12: ==631775== at 0xFFA022D: pipe (pipe.c:29) ==631775== by 0x188D707D: ??? ==631775== by 0x13E3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==631775== by 0xF7C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631775== by 0xF75CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631775== by 0xE453D38: PetscInitialize (pinit.c:924) ==631775== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==631775== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==631775== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==631775== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==631775== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==631775== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==631775== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==631775== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==631775== ==631775== Open file descriptor 8: /dev/shm/open_mpi.0000 ==631775== at 0xFFA4BCC: __open_nocancel (open64_nocancel.c:39) ==631775== by 0xFF28C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==631775== by 0xE2FD822: ??? ==631775== by 0xE2FD96F: ??? ==631775== by 0x13EE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631775== by 0x13EE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631775== by 0x13E99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631775== by 0x13E3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==631775== by 0xF7C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631775== by 0xF75CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631775== by 0xE453D38: PetscInitialize (pinit.c:924) ==631775== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==631775== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==631775== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==631775== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==631775== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==631775== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==631775== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==631775== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==631775== ==631775== Open file descriptor 114: ==631775== ==631775== ==631775== Open file descriptor 111: ==631775== ==631775== ==631775== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==631775== ==631775== ==631775== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==631775== ==631775== ==631775== ==631775== HEAP SUMMARY: ==631775== in use at exit: 700,770 bytes in 9,378 blocks ==631775== total heap usage: 852,797 allocs, 843,419 frees, 1,518,446,846 bytes allocated ==631775== ==631775== LEAK SUMMARY: ==631775== definitely lost: 0 bytes in 0 blocks ==631775== indirectly lost: 0 bytes in 0 blocks ==631775== possibly lost: 0 bytes in 0 blocks ==631775== still reachable: 56 bytes in 3 blocks ==631775== suppressed: 700,714 bytes in 9,375 blocks ==631775== Reachable blocks (those to which a pointer was found) are not shown. ==631775== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==631775== ==631775== For lists of detected and suppressed errors, rerun with: -s ==631775== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)