==632082== Memcheck, a memory error detector ==632082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==632082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==632082== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==632082== Parent PID: 629821 ==632082== ==632082== ==632082== FILE DESCRIPTORS: 9 open (3 std) at exit. ==632082== Open file descriptor 12: ==632082== at 0xEAA722D: pipe (pipe.c:29) ==632082== by 0x188D707D: ??? ==632082== by 0x13EDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==632082== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==632082== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==632082== by 0xF417D38: PetscInitialize (pinit.c:924) ==632082== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==632082== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==632082== by 0x13F008: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==632082== by 0x1388FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==632082== by 0x13B254: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==632082== by 0x13B150: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==632082== by 0x13B763: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==632082== by 0x137100: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==632082== ==632082== Open file descriptor 8: /dev/shm/open_mpi.0000 ==632082== at 0xEAABBCC: __open_nocancel (open64_nocancel.c:39) ==632082== by 0xEA2FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==632082== by 0xE2FD822: ??? ==632082== by 0xE2FD96F: ??? ==632082== by 0x13F816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==632082== by 0x13F81938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==632082== by 0x13F37922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==632082== by 0x13EDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==632082== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==632082== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==632082== by 0xF417D38: PetscInitialize (pinit.c:924) ==632082== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==632082== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==632082== by 0x13F008: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==632082== by 0x1388FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==632082== by 0x13B254: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==632082== by 0x13B150: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==632082== by 0x13B763: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==632082== by 0x137100: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==632082== ==632082== Open file descriptor 114: ==632082== ==632082== ==632082== Open file descriptor 111: ==632082== ==632082== ==632082== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==632082== ==632082== ==632082== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==632082== ==632082== ==632082== ==632082== HEAP SUMMARY: ==632082== in use at exit: 700,702 bytes in 9,374 blocks ==632082== total heap usage: 6,671,463 allocs, 6,662,089 frees, 9,009,601,826 bytes allocated ==632082== ==632082== LEAK SUMMARY: ==632082== definitely lost: 0 bytes in 0 blocks ==632082== indirectly lost: 0 bytes in 0 blocks ==632082== possibly lost: 0 bytes in 0 blocks ==632082== still reachable: 56 bytes in 3 blocks ==632082== suppressed: 700,646 bytes in 9,371 blocks ==632082== Reachable blocks (those to which a pointer was found) are not shown. ==632082== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==632082== ==632082== For lists of detected and suppressed errors, rerun with: -s ==632082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)