==631443== Memcheck, a memory error detector ==631443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==631443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==631443== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==631443== Parent PID: 629821 ==631443== ==631443== ==631443== FILE DESCRIPTORS: 9 open (3 std) at exit. ==631443== Open file descriptor 12: ==631443== at 0xD04722D: pipe (pipe.c:29) ==631443== by 0x188D807D: ??? ==631443== by 0x13E8C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==631443== by 0x10359418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631443== by 0x102F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631443== by 0xEFE9D38: PetscInitialize (pinit.c:924) ==631443== by 0xCC4F58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==631443== by 0xCC4F5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==631443== by 0x123FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==631443== by 0x11F5E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==631443== by 0x121B8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==631443== by 0x121A8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==631443== by 0x12209D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==631443== by 0x11DDE5: main (TestTysonNovak2001OdeSystem.cpp:18) ==631443== ==631443== Open file descriptor 8: /dev/shm/open_mpi.0000 ==631443== at 0xD04BBCC: __open_nocancel (open64_nocancel.c:39) ==631443== by 0xCFCFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==631443== by 0xCC87822: ??? ==631443== by 0xCC8796F: ??? ==631443== by 0x13F316DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631443== by 0x13F31938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631443== by 0x13EE7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==631443== by 0x13E8C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==631443== by 0x10359418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631443== by 0x102F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==631443== by 0xEFE9D38: PetscInitialize (pinit.c:924) ==631443== by 0xCC4F58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==631443== by 0xCC4F5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==631443== by 0x123FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==631443== by 0x11F5E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==631443== by 0x121B8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==631443== by 0x121A8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==631443== by 0x12209D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==631443== by 0x11DDE5: main (TestTysonNovak2001OdeSystem.cpp:18) ==631443== ==631443== Open file descriptor 114: ==631443== ==631443== ==631443== Open file descriptor 111: ==631443== ==631443== ==631443== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==631443== ==631443== ==631443== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==631443== ==631443== ==631443== ==631443== HEAP SUMMARY: ==631443== in use at exit: 700,738 bytes in 9,377 blocks ==631443== total heap usage: 59,948 allocs, 50,571 frees, 1,354,261,751 bytes allocated ==631443== ==631443== LEAK SUMMARY: ==631443== definitely lost: 0 bytes in 0 blocks ==631443== indirectly lost: 0 bytes in 0 blocks ==631443== possibly lost: 0 bytes in 0 blocks ==631443== still reachable: 24 bytes in 2 blocks ==631443== suppressed: 700,714 bytes in 9,375 blocks ==631443== Reachable blocks (those to which a pointer was found) are not shown. ==631443== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==631443== ==631443== For lists of detected and suppressed errors, rerun with: -s ==631443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)