==692743== Memcheck, a memory error detector ==692743== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692743== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692743== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==692743== Parent PID: 690814 ==692743== ==692743== ==692743== FILE DESCRIPTORS: 9 open (3 std) at exit. ==692743== Open file descriptor 12: ==692743== at 0xF3D222D: pipe (pipe.c:29) ==692743== by 0x17D0907D: ??? ==692743== by 0x1326C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692743== by 0xEBF5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692743== by 0xEB8ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692743== by 0xD885D38: PetscInitialize (pinit.c:924) ==692743== by 0xD6F758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692743== by 0xD6F75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692743== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692743== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692743== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692743== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692743== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692743== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==692743== ==692743== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692743== at 0xF3D6BCC: __open_nocancel (open64_nocancel.c:39) ==692743== by 0xF35AC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692743== by 0xD72F822: ??? ==692743== by 0xD72F96F: ??? ==692743== by 0x133136DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692743== by 0x13313938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692743== by 0x132C9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692743== by 0x1326C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692743== by 0xEBF5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692743== by 0xEB8ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692743== by 0xD885D38: PetscInitialize (pinit.c:924) ==692743== by 0xD6F758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692743== by 0xD6F75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692743== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692743== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692743== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692743== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692743== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692743== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==692743== ==692743== Open file descriptor 116: ==692743== ==692743== ==692743== Open file descriptor 112: ==692743== ==692743== ==692743== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==692743== ==692743== ==692743== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692743== ==692743== ==692743== ==692743== HEAP SUMMARY: ==692743== in use at exit: 700,770 bytes in 9,378 blocks ==692743== total heap usage: 850,453 allocs, 841,075 frees, 1,517,539,787 bytes allocated ==692743== ==692743== LEAK SUMMARY: ==692743== definitely lost: 0 bytes in 0 blocks ==692743== indirectly lost: 0 bytes in 0 blocks ==692743== possibly lost: 0 bytes in 0 blocks ==692743== still reachable: 56 bytes in 3 blocks ==692743== suppressed: 700,714 bytes in 9,375 blocks ==692743== Reachable blocks (those to which a pointer was found) are not shown. ==692743== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692743== ==692743== For lists of detected and suppressed errors, rerun with: -s ==692743== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)