==708820== Memcheck, a memory error detector ==708820== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==708820== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==708820== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==708820== Parent PID: 690814 ==708820== ==708820== ==708820== FILE DESCRIPTORS: 9 open (3 std) at exit. ==708820== Open file descriptor 12: ==708820== at 0xE1A222D: pipe (pipe.c:29) ==708820== by 0x17D0907D: ??? ==708820== by 0x1330E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708820== by 0xFAD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708820== by 0xFA6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708820== by 0xE760D38: PetscInitialize (pinit.c:924) ==708820== by 0xDAA758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708820== by 0xDAA75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708820== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708820== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708820== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708820== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708820== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708820== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==708820== ==708820== Open file descriptor 8: /dev/shm/open_mpi.0000 ==708820== at 0xE1A6BCC: __open_nocancel (open64_nocancel.c:39) ==708820== by 0xE12AC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==708820== by 0xDADF822: ??? ==708820== by 0xDADF96F: ??? ==708820== by 0x133B36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708820== by 0x133B3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708820== by 0x13369922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708820== by 0x1330E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708820== by 0xFAD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708820== by 0xFA6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708820== by 0xE760D38: PetscInitialize (pinit.c:924) ==708820== by 0xDAA758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708820== by 0xDAA75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708820== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708820== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708820== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708820== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708820== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708820== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==708820== ==708820== Open file descriptor 116: ==708820== ==708820== ==708820== Open file descriptor 112: ==708820== ==708820== ==708820== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==708820== ==708820== ==708820== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==708820== ==708820== ==708820== ==708820== HEAP SUMMARY: ==708820== in use at exit: 700,770 bytes in 9,378 blocks ==708820== total heap usage: 2,083,631 allocs, 2,074,253 frees, 1,688,990,943 bytes allocated ==708820== ==708820== LEAK SUMMARY: ==708820== definitely lost: 0 bytes in 0 blocks ==708820== indirectly lost: 0 bytes in 0 blocks ==708820== possibly lost: 0 bytes in 0 blocks ==708820== still reachable: 56 bytes in 3 blocks ==708820== suppressed: 700,714 bytes in 9,375 blocks ==708820== Reachable blocks (those to which a pointer was found) are not shown. ==708820== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==708820== ==708820== For lists of detected and suppressed errors, rerun with: -s ==708820== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)