==780296== Memcheck, a memory error detector ==780296== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==780296== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==780296== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==780296== Parent PID: 778752 ==780296== ==780296== ==780296== FILE DESCRIPTORS: 9 open (3 std) at exit. ==780296== Open file descriptor 12: ==780296== at 0xE47722D: pipe (pipe.c:29) ==780296== by 0x188D407D: ??? ==780296== by 0x12E764CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==780296== by 0xE0C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==780296== by 0xE05FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==780296== by 0xCD56D38: PetscInitialize (pinit.c:924) ==780296== by 0xCBC858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==780296== by 0xCBC85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==780296== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==780296== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==780296== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==780296== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==780296== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==780296== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==780296== ==780296== Open file descriptor 8: /dev/shm/open_mpi.0000 ==780296== at 0xE47BBCC: __open_nocancel (open64_nocancel.c:39) ==780296== by 0xE3FFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==780296== by 0xCC00822: ??? ==780296== by 0xCC0096F: ??? ==780296== by 0x12F1B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==780296== by 0x12F1B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==780296== by 0x12ED1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==780296== by 0x12E762DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==780296== by 0xE0C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==780296== by 0xE05FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==780296== by 0xCD56D38: PetscInitialize (pinit.c:924) ==780296== by 0xCBC858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==780296== by 0xCBC85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==780296== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==780296== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==780296== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==780296== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==780296== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==780296== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==780296== ==780296== Open file descriptor 116: ==780296== ==780296== ==780296== Open file descriptor 112: ==780296== ==780296== ==780296== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==780296== ==780296== ==780296== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==780296== ==780296== ==780296== ==780296== HEAP SUMMARY: ==780296== in use at exit: 700,738 bytes in 9,377 blocks ==780296== total heap usage: 167,657 allocs, 158,280 frees, 1,364,591,618 bytes allocated ==780296== ==780296== LEAK SUMMARY: ==780296== definitely lost: 0 bytes in 0 blocks ==780296== indirectly lost: 0 bytes in 0 blocks ==780296== possibly lost: 0 bytes in 0 blocks ==780296== still reachable: 24 bytes in 2 blocks ==780296== suppressed: 700,714 bytes in 9,375 blocks ==780296== Reachable blocks (those to which a pointer was found) are not shown. ==780296== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==780296== ==780296== For lists of detected and suppressed errors, rerun with: -s ==780296== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)