==900456== Memcheck, a memory error detector ==900456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==900456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==900456== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==900456== Parent PID: 898895 ==900456== ==900456== ==900456== FILE DESCRIPTORS: 9 open (3 std) at exit. ==900456== Open file descriptor 12: ==900456== at 0xC9DF22D: pipe (pipe.c:29) ==900456== by 0x17E6007D: ??? ==900456== by 0x134164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==900456== by 0xF8E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==900456== by 0xF879D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==900456== by 0xE570D38: PetscInitialize (pinit.c:924) ==900456== by 0xC5E758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==900456== by 0xC5E75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==900456== by 0x123FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==900456== by 0x11F5E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==900456== by 0x121B8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==900456== by 0x121A8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==900456== by 0x12209D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==900456== by 0x11DDE5: main (TestTysonNovak2001OdeSystem.cpp:18) ==900456== ==900456== Open file descriptor 8: /dev/shm/open_mpi.0000 ==900456== at 0xC9E3BCC: __open_nocancel (open64_nocancel.c:39) ==900456== by 0xC967C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==900456== by 0xC61F822: ??? ==900456== by 0xC61F96F: ??? ==900456== by 0x134BB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==900456== by 0x134BB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==900456== by 0x13471922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==900456== by 0x134162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==900456== by 0xF8E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==900456== by 0xF879D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==900456== by 0xE570D38: PetscInitialize (pinit.c:924) ==900456== by 0xC5E758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==900456== by 0xC5E75D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==900456== by 0x123FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==900456== by 0x11F5E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==900456== by 0x121B8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==900456== by 0x121A8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==900456== by 0x12209D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==900456== by 0x11DDE5: main (TestTysonNovak2001OdeSystem.cpp:18) ==900456== ==900456== Open file descriptor 116: ==900456== ==900456== ==900456== Open file descriptor 112: ==900456== ==900456== ==900456== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==900456== ==900456== ==900456== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==900456== ==900456== ==900456== ==900456== HEAP SUMMARY: ==900456== in use at exit: 700,738 bytes in 9,377 blocks ==900456== total heap usage: 59,810 allocs, 50,433 frees, 1,354,235,816 bytes allocated ==900456== ==900456== LEAK SUMMARY: ==900456== definitely lost: 0 bytes in 0 blocks ==900456== indirectly lost: 0 bytes in 0 blocks ==900456== possibly lost: 0 bytes in 0 blocks ==900456== still reachable: 24 bytes in 2 blocks ==900456== suppressed: 700,714 bytes in 9,375 blocks ==900456== Reachable blocks (those to which a pointer was found) are not shown. ==900456== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==900456== ==900456== For lists of detected and suppressed errors, rerun with: -s ==900456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)