==969348== Memcheck, a memory error detector ==969348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==969348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==969348== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==969348== Parent PID: 967822 ==969348== ==969348== ==969348== FILE DESCRIPTORS: 9 open (3 std) at exit. ==969348== Open file descriptor 12: ==969348== at 0xDE0F22D: pipe (pipe.c:29) ==969348== by 0x17E6007D: ??? ==969348== by 0x123FF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==969348== by 0xDA5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==969348== by 0xD9F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==969348== by 0xC6EED38: PetscInitialize (pinit.c:924) ==969348== by 0xC56058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==969348== by 0xC5605D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==969348== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==969348== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==969348== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==969348== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==969348== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==969348== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==969348== ==969348== Open file descriptor 8: /dev/shm/open_mpi.0000 ==969348== at 0xDE13BCC: __open_nocancel (open64_nocancel.c:39) ==969348== by 0xDD97C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==969348== by 0xC598822: ??? ==969348== by 0xC59896F: ??? ==969348== by 0x124A46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==969348== by 0x124A4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==969348== by 0x1245A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==969348== by 0x123FF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==969348== by 0xDA5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==969348== by 0xD9F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==969348== by 0xC6EED38: PetscInitialize (pinit.c:924) ==969348== by 0xC56058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==969348== by 0xC5605D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==969348== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==969348== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==969348== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==969348== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==969348== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==969348== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==969348== ==969348== Open file descriptor 116: ==969348== ==969348== ==969348== Open file descriptor 112: ==969348== ==969348== ==969348== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==969348== ==969348== ==969348== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==969348== ==969348== ==969348== ==969348== HEAP SUMMARY: ==969348== in use at exit: 700,738 bytes in 9,377 blocks ==969348== total heap usage: 167,524 allocs, 158,147 frees, 1,364,574,352 bytes allocated ==969348== ==969348== LEAK SUMMARY: ==969348== definitely lost: 0 bytes in 0 blocks ==969348== indirectly lost: 0 bytes in 0 blocks ==969348== possibly lost: 0 bytes in 0 blocks ==969348== still reachable: 24 bytes in 2 blocks ==969348== suppressed: 700,714 bytes in 9,375 blocks ==969348== Reachable blocks (those to which a pointer was found) are not shown. ==969348== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==969348== ==969348== For lists of detected and suppressed errors, rerun with: -s ==969348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)