==988077== Memcheck, a memory error detector ==988077== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==988077== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==988077== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==988077== Parent PID: 967822 ==988077== ==988077== ==988077== FILE DESCRIPTORS: 9 open (3 std) at exit. ==988077== Open file descriptor 12: ==988077== at 0x10D2122D: pipe (pipe.c:29) ==988077== by 0x1974007D: ??? ==988077== by 0x14CA34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==988077== by 0x1062B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988077== by 0x105C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988077== by 0xF2BBD38: PetscInitialize (pinit.c:924) ==988077== by 0xF12D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==988077== by 0xF12D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==988077== by 0x232E47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==988077== by 0x229013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==988077== by 0x22CCD6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==988077== by 0x22CB76: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==988077== by 0x22D20D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==988077== by 0x227300: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==988077== ==988077== Open file descriptor 8: /dev/shm/open_mpi.0000 ==988077== at 0x10D25BCC: __open_nocancel (open64_nocancel.c:39) ==988077== by 0x10CA9C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==988077== by 0xF165822: ??? ==988077== by 0xF16596F: ??? ==988077== by 0x14D486DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988077== by 0x14D48938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988077== by 0x14CFE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988077== by 0x14CA32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==988077== by 0x1062B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988077== by 0x105C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988077== by 0xF2BBD38: PetscInitialize (pinit.c:924) ==988077== by 0xF12D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==988077== by 0xF12D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==988077== by 0x232E47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==988077== by 0x229013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==988077== by 0x22CCD6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==988077== by 0x22CB76: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==988077== by 0x22D20D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==988077== by 0x227300: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==988077== ==988077== Open file descriptor 116: ==988077== ==988077== ==988077== Open file descriptor 112: ==988077== ==988077== ==988077== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==988077== ==988077== ==988077== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==988077== ==988077== ==988077== ==988077== HEAP SUMMARY: ==988077== in use at exit: 700,718 bytes in 9,374 blocks ==988077== total heap usage: 3,331,548 allocs, 3,322,174 frees, 1,615,414,069 bytes allocated ==988077== ==988077== LEAK SUMMARY: ==988077== definitely lost: 0 bytes in 0 blocks ==988077== indirectly lost: 0 bytes in 0 blocks ==988077== possibly lost: 0 bytes in 0 blocks ==988077== still reachable: 56 bytes in 3 blocks ==988077== suppressed: 700,662 bytes in 9,371 blocks ==988077== Reachable blocks (those to which a pointer was found) are not shown. ==988077== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==988077== ==988077== For lists of detected and suppressed errors, rerun with: -s ==988077== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32)