==990438== Memcheck, a memory error detector ==990438== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==990438== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==990438== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==990438== Parent PID: 967822 ==990438== ==990438== Warning: invalid file descriptor -1 in syscall close() ==990438== ==990438== FILE DESCRIPTORS: 9 open (3 std) at exit. ==990438== Open file descriptor 12: ==990438== at 0xBA4E22D: pipe (pipe.c:29) ==990438== by 0x13CC307D: ??? ==990438== by 0xF9844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==990438== by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==990438== by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==990438== by 0x9C19D38: PetscInitialize (pinit.c:924) ==990438== by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==990438== by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==990438== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==990438== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==990438== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==990438== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==990438== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==990438== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==990438== ==990438== Open file descriptor 8: /dev/shm/open_mpi.0000 ==990438== at 0xBA52BCC: __open_nocancel (open64_nocancel.c:39) ==990438== by 0xB9D6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==990438== by 0x9AC1822: ??? ==990438== by 0x9AC196F: ??? ==990438== by 0xFA296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==990438== by 0xFA29938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==990438== by 0xF9DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==990438== by 0xF9842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==990438== by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==990438== by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==990438== by 0x9C19D38: PetscInitialize (pinit.c:924) ==990438== by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==990438== by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==990438== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==990438== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==990438== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==990438== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==990438== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==990438== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==990438== ==990438== Open file descriptor 116: ==990438== ==990438== ==990438== Open file descriptor 112: ==990438== ==990438== ==990438== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==990438== ==990438== ==990438== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==990438== ==990438== ==990438== ==990438== HEAP SUMMARY: ==990438== in use at exit: 701,166 bytes in 9,383 blocks ==990438== total heap usage: 6,603,217 allocs, 6,593,834 frees, 4,030,768,876 bytes allocated ==990438== ==990438== LEAK SUMMARY: ==990438== definitely lost: 0 bytes in 0 blocks ==990438== indirectly lost: 0 bytes in 0 blocks ==990438== possibly lost: 0 bytes in 0 blocks ==990438== still reachable: 24 bytes in 2 blocks ==990438== suppressed: 701,142 bytes in 9,381 blocks ==990438== Reachable blocks (those to which a pointer was found) are not shown. ==990438== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==990438== ==990438== For lists of detected and suppressed errors, rerun with: -s ==990438== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)