==988392== Memcheck, a memory error detector ==988392== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==988392== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==988392== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==988392== Parent PID: 967822 ==988392== ==988392== ==988392== FILE DESCRIPTORS: 9 open (3 std) at exit. ==988392== Open file descriptor 12: ==988392== at 0x10CDF22D: pipe (pipe.c:29) ==988392== by 0x1974007D: ??? ==988392== by 0x14CA34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==988392== by 0x105E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988392== by 0x10582D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988392== by 0xF259D38: PetscInitialize (pinit.c:924) ==988392== by 0xF12D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==988392== by 0xF12D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==988392== by 0x12E5E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==988392== by 0x1287FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==988392== by 0x12AC06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==988392== by 0x12AB02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==988392== by 0x12B115: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==988392== by 0x127000: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==988392== ==988392== Open file descriptor 8: /dev/shm/open_mpi.0000 ==988392== at 0x10CE3BCC: __open_nocancel (open64_nocancel.c:39) ==988392== by 0x10C67C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==988392== by 0x104E3822: ??? ==988392== by 0x104E396F: ??? ==988392== by 0x14D486DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988392== by 0x14D48938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988392== by 0x14CFE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==988392== by 0x14CA32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==988392== by 0x105E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988392== by 0x10582D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==988392== by 0xF259D38: PetscInitialize (pinit.c:924) ==988392== by 0xF12D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==988392== by 0xF12D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==988392== by 0x12E5E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==988392== by 0x1287FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==988392== by 0x12AC06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==988392== by 0x12AB02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==988392== by 0x12B115: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==988392== by 0x127000: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==988392== ==988392== Open file descriptor 116: ==988392== ==988392== ==988392== Open file descriptor 112: ==988392== ==988392== ==988392== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==988392== ==988392== ==988392== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==988392== ==988392== ==988392== ==988392== HEAP SUMMARY: ==988392== in use at exit: 700,718 bytes in 9,374 blocks ==988392== total heap usage: 16,185,337 allocs, 16,175,963 frees, 2,844,131,002 bytes allocated ==988392== ==988392== LEAK SUMMARY: ==988392== definitely lost: 0 bytes in 0 blocks ==988392== indirectly lost: 0 bytes in 0 blocks ==988392== possibly lost: 0 bytes in 0 blocks ==988392== still reachable: 56 bytes in 3 blocks ==988392== suppressed: 700,662 bytes in 9,371 blocks ==988392== Reachable blocks (those to which a pointer was found) are not shown. ==988392== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==988392== ==988392== For lists of detected and suppressed errors, rerun with: -s ==988392== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)