==984849== Memcheck, a memory error detector ==984849== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==984849== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==984849== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==984849== Parent PID: 967822 ==984849== ==984849== ==984849== FILE DESCRIPTORS: 9 open (3 std) at exit. ==984849== Open file descriptor 12: ==984849== at 0xE02E22D: pipe (pipe.c:29) ==984849== by 0x17E5E07D: ??? ==984849== by 0x134654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==984849== by 0xFD0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==984849== by 0xFCA7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==984849== by 0xE99ED38: PetscInitialize (pinit.c:924) ==984849== by 0xD84C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==984849== by 0xD84C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==984849== by 0x1369CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==984849== by 0x131DCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==984849== by 0x13461C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==984849== by 0x1344BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==984849== by 0x134B53: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==984849== by 0x130100: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==984849== ==984849== Open file descriptor 8: /dev/shm/open_mpi.0000 ==984849== at 0xE032BCC: __open_nocancel (open64_nocancel.c:39) ==984849== by 0xDFB6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==984849== by 0xD884822: ??? ==984849== by 0xD88496F: ??? ==984849== by 0x1350A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==984849== by 0x1350A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==984849== by 0x134C0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==984849== by 0x134652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==984849== by 0xFD0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==984849== by 0xFCA7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==984849== by 0xE99ED38: PetscInitialize (pinit.c:924) ==984849== by 0xD84C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==984849== by 0xD84C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==984849== by 0x1369CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==984849== by 0x131DCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==984849== by 0x13461C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==984849== by 0x1344BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==984849== by 0x134B53: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==984849== by 0x130100: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==984849== ==984849== Open file descriptor 116: ==984849== ==984849== ==984849== Open file descriptor 112: ==984849== ==984849== ==984849== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==984849== ==984849== ==984849== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==984849== ==984849== ==984849== ==984849== HEAP SUMMARY: ==984849== in use at exit: 700,770 bytes in 9,378 blocks ==984849== total heap usage: 669,167 allocs, 659,789 frees, 1,738,451,117 bytes allocated ==984849== ==984849== LEAK SUMMARY: ==984849== definitely lost: 0 bytes in 0 blocks ==984849== indirectly lost: 0 bytes in 0 blocks ==984849== possibly lost: 0 bytes in 0 blocks ==984849== still reachable: 56 bytes in 3 blocks ==984849== suppressed: 700,714 bytes in 9,375 blocks ==984849== Reachable blocks (those to which a pointer was found) are not shown. ==984849== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==984849== ==984849== For lists of detected and suppressed errors, rerun with: -s ==984849== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)