==986438== Memcheck, a memory error detector ==986438== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==986438== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==986438== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==986438== Parent PID: 967822 ==986438== ==986438== ==986438== FILE DESCRIPTORS: 9 open (3 std) at exit. ==986438== Open file descriptor 12: ==986438== at 0xF4E522D: pipe (pipe.c:29) ==986438== by 0x17E5E07D: ??? ==986438== by 0x133C74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==986438== by 0xED08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==986438== by 0xECA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==986438== by 0xD978D38: PetscInitialize (pinit.c:924) ==986438== by 0xD84C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==986438== by 0xD84C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==986438== by 0x13418B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==986438== by 0x12DC6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==986438== by 0x13048A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==986438== by 0x13032B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==986438== by 0x1309C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==986438== by 0x12BFA0: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==986438== ==986438== Open file descriptor 8: /dev/shm/open_mpi.0000 ==986438== at 0xF4E9BCC: __open_nocancel (open64_nocancel.c:39) ==986438== by 0xF46DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==986438== by 0xEC02822: ??? ==986438== by 0xEC0296F: ??? ==986438== by 0x1346C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==986438== by 0x1346C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==986438== by 0x13422922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==986438== by 0x133C72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==986438== by 0xED08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==986438== by 0xECA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==986438== by 0xD978D38: PetscInitialize (pinit.c:924) ==986438== by 0xD84C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==986438== by 0xD84C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==986438== by 0x13418B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==986438== by 0x12DC6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==986438== by 0x13048A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==986438== by 0x13032B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==986438== by 0x1309C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==986438== by 0x12BFA0: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==986438== ==986438== Open file descriptor 116: ==986438== ==986438== ==986438== Open file descriptor 112: ==986438== ==986438== ==986438== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==986438== ==986438== ==986438== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==986438== ==986438== ==986438== ==986438== HEAP SUMMARY: ==986438== in use at exit: 700,770 bytes in 9,378 blocks ==986438== total heap usage: 1,269,955 allocs, 1,260,577 frees, 1,406,480,060 bytes allocated ==986438== ==986438== LEAK SUMMARY: ==986438== definitely lost: 0 bytes in 0 blocks ==986438== indirectly lost: 0 bytes in 0 blocks ==986438== possibly lost: 0 bytes in 0 blocks ==986438== still reachable: 56 bytes in 3 blocks ==986438== suppressed: 700,714 bytes in 9,375 blocks ==986438== Reachable blocks (those to which a pointer was found) are not shown. ==986438== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==986438== ==986438== For lists of detected and suppressed errors, rerun with: -s ==986438== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)