==1047307== Memcheck, a memory error detector ==1047307== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1047307== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1047307== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1047307== Parent PID: 1029260 ==1047307== ==1047307== ==1047307== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1047307== Open file descriptor 12: ==1047307== at 0xF08022D: pipe (pipe.c:29) ==1047307== by 0x18BE607D: ??? ==1047307== by 0x141E94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1047307== by 0x109B0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1047307== by 0x10949D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1047307== by 0xF63ED38: PetscInitialize (pinit.c:924) ==1047307== by 0xE98558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1047307== by 0xE9855D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1047307== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1047307== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1047307== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1047307== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1047307== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1047307== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1047307== ==1047307== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1047307== at 0xF084BCC: __open_nocancel (open64_nocancel.c:39) ==1047307== by 0xF008C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1047307== by 0xE9BD822: ??? ==1047307== by 0xE9BD96F: ??? ==1047307== by 0x1428E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1047307== by 0x1428E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1047307== by 0x14244922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1047307== by 0x141E92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1047307== by 0x109B0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1047307== by 0x10949D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1047307== by 0xF63ED38: PetscInitialize (pinit.c:924) ==1047307== by 0xE98558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1047307== by 0xE9855D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1047307== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1047307== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1047307== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1047307== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1047307== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1047307== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1047307== ==1047307== Open file descriptor 116: ==1047307== ==1047307== ==1047307== Open file descriptor 112: ==1047307== ==1047307== ==1047307== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1047307== ==1047307== ==1047307== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1047307== ==1047307== ==1047307== ==1047307== HEAP SUMMARY: ==1047307== in use at exit: 700,775 bytes in 9,378 blocks ==1047307== total heap usage: 2,084,318 allocs, 2,074,940 frees, 1,689,042,662 bytes allocated ==1047307== ==1047307== LEAK SUMMARY: ==1047307== definitely lost: 0 bytes in 0 blocks ==1047307== indirectly lost: 0 bytes in 0 blocks ==1047307== possibly lost: 0 bytes in 0 blocks ==1047307== still reachable: 56 bytes in 3 blocks ==1047307== suppressed: 700,719 bytes in 9,375 blocks ==1047307== Reachable blocks (those to which a pointer was found) are not shown. ==1047307== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1047307== ==1047307== For lists of detected and suppressed errors, rerun with: -s ==1047307== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)