==1095464== Memcheck, a memory error detector ==1095464== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1095464== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1095464== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1095464== Parent PID: 1072768 ==1095464== ==1095464== Warning: invalid file descriptor -1 in syscall close() ==1095464== ==1095464== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1095464== Open file descriptor 12: ==1095464== at 0xBDE022D: pipe (pipe.c:29) ==1095464== by 0x1404907D: ??? ==1095464== by 0xFD0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1095464== by 0xB6D0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1095464== by 0xB669D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1095464== by 0x9FABD38: PetscInitialize (pinit.c:924) ==1095464== by 0x9E1B68F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1095464== by 0x9E1B6DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1095464== by 0x153E00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1095464== by 0x149A2F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1095464== by 0x14CD8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1095464== by 0x14CC2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1095464== by 0x14D2C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1095464== by 0x147D10: main (TestMonodomainProblem.cpp:19) ==1095464== ==1095464== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1095464== at 0xBDE4BCC: __open_nocancel (open64_nocancel.c:39) ==1095464== by 0xBD68C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1095464== by 0x9E53822: ??? ==1095464== by 0x9E5396F: ??? ==1095464== by 0xFDAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1095464== by 0xFDAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1095464== by 0xFD65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1095464== by 0xFD0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1095464== by 0xB6D0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1095464== by 0xB669D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1095464== by 0x9FABD38: PetscInitialize (pinit.c:924) ==1095464== by 0x9E1B68F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1095464== by 0x9E1B6DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1095464== by 0x153E00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1095464== by 0x149A2F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1095464== by 0x14CD8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1095464== by 0x14CC2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1095464== by 0x14D2C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1095464== by 0x147D10: main (TestMonodomainProblem.cpp:19) ==1095464== ==1095464== Open file descriptor 116: ==1095464== ==1095464== ==1095464== Open file descriptor 112: ==1095464== ==1095464== ==1095464== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1095464== ==1095464== ==1095464== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1095464== ==1095464== ==1095464== ==1095464== HEAP SUMMARY: ==1095464== in use at exit: 701,168 bytes in 9,383 blocks ==1095464== total heap usage: 6,602,548 allocs, 6,593,165 frees, 4,030,440,756 bytes allocated ==1095464== ==1095464== LEAK SUMMARY: ==1095464== definitely lost: 0 bytes in 0 blocks ==1095464== indirectly lost: 0 bytes in 0 blocks ==1095464== possibly lost: 0 bytes in 0 blocks ==1095464== still reachable: 24 bytes in 2 blocks ==1095464== suppressed: 701,144 bytes in 9,381 blocks ==1095464== Reachable blocks (those to which a pointer was found) are not shown. ==1095464== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1095464== ==1095464== For lists of detected and suppressed errors, rerun with: -s ==1095464== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 126 from 32)