==1074959== Memcheck, a memory error detector ==1074959== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1074959== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1074959== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==1074959== Parent PID: 1072768 ==1074959== ==1074959== ==1074959== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1074959== Open file descriptor 12: ==1074959== at 0x101FF22D: pipe (pipe.c:29) ==1074959== by 0x18B2307D: ??? ==1074959== by 0x1408C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1074959== by 0xFA22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1074959== by 0xF9BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1074959== by 0xE6B2D38: PetscInitialize (pinit.c:924) ==1074959== by 0xE52468F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1074959== by 0xE5246DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1074959== by 0x209DAB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1074959== by 0x202661: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1074959== by 0x205AE2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1074959== by 0x2059DE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1074959== by 0x205FF1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1074959== by 0x200E20: main (TestOffLatticeSimulation3d.cpp:18) ==1074959== ==1074959== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1074959== at 0x10203BCC: __open_nocancel (open64_nocancel.c:39) ==1074959== by 0x10187C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1074959== by 0xE55C822: ??? ==1074959== by 0xE55C96F: ??? ==1074959== by 0x141316DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1074959== by 0x14131938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1074959== by 0x140E7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1074959== by 0x1408C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1074959== by 0xFA22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1074959== by 0xF9BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1074959== by 0xE6B2D38: PetscInitialize (pinit.c:924) ==1074959== by 0xE52468F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1074959== by 0xE5246DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1074959== by 0x209DAB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1074959== by 0x202661: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1074959== by 0x205AE2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1074959== by 0x2059DE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1074959== by 0x205FF1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1074959== by 0x200E20: main (TestOffLatticeSimulation3d.cpp:18) ==1074959== ==1074959== Open file descriptor 116: ==1074959== ==1074959== ==1074959== Open file descriptor 112: ==1074959== ==1074959== ==1074959== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==1074959== ==1074959== ==1074959== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1074959== ==1074959== ==1074959== ==1074959== HEAP SUMMARY: ==1074959== in use at exit: 700,775 bytes in 9,378 blocks ==1074959== total heap usage: 852,959 allocs, 843,581 frees, 1,517,938,424 bytes allocated ==1074959== ==1074959== LEAK SUMMARY: ==1074959== definitely lost: 0 bytes in 0 blocks ==1074959== indirectly lost: 0 bytes in 0 blocks ==1074959== possibly lost: 0 bytes in 0 blocks ==1074959== still reachable: 56 bytes in 3 blocks ==1074959== suppressed: 700,719 bytes in 9,375 blocks ==1074959== Reachable blocks (those to which a pointer was found) are not shown. ==1074959== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1074959== ==1074959== For lists of detected and suppressed errors, rerun with: -s ==1074959== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)