==1078624== Memcheck, a memory error detector ==1078624== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1078624== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1078624== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1078624== Parent PID: 1072768 ==1078624== ==1078624== ==1078624== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1078624== Open file descriptor 12: ==1078624== at 0xF0B422D: pipe (pipe.c:29) ==1078624== by 0x18B2307D: ??? ==1078624== by 0x141264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1078624== by 0x109D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1078624== by 0x1096DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1078624== by 0xF664D38: PetscInitialize (pinit.c:924) ==1078624== by 0xE8D068F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1078624== by 0xE8D06DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1078624== by 0x140260: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1078624== by 0x1396C7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1078624== by 0x13C522: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1078624== by 0x13C3C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1078624== by 0x13CA59: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1078624== by 0x1379C0: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1078624== ==1078624== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1078624== at 0xF0B8BCC: __open_nocancel (open64_nocancel.c:39) ==1078624== by 0xF03CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1078624== by 0xE908822: ??? ==1078624== by 0xE90896F: ??? ==1078624== by 0x141CB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1078624== by 0x141CB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1078624== by 0x14181922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1078624== by 0x141262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1078624== by 0x109D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1078624== by 0x1096DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1078624== by 0xF664D38: PetscInitialize (pinit.c:924) ==1078624== by 0xE8D068F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1078624== by 0xE8D06DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1078624== by 0x140260: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1078624== by 0x1396C7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1078624== by 0x13C522: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1078624== by 0x13C3C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1078624== by 0x13CA59: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1078624== by 0x1379C0: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1078624== ==1078624== Open file descriptor 116: ==1078624== ==1078624== ==1078624== Open file descriptor 112: ==1078624== ==1078624== ==1078624== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==1078624== ==1078624== ==1078624== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1078624== ==1078624== ==1078624== ==1078624== HEAP SUMMARY: ==1078624== in use at exit: 700,775 bytes in 9,378 blocks ==1078624== total heap usage: 2,341,198 allocs, 2,331,820 frees, 1,789,320,322 bytes allocated ==1078624== ==1078624== LEAK SUMMARY: ==1078624== definitely lost: 0 bytes in 0 blocks ==1078624== indirectly lost: 0 bytes in 0 blocks ==1078624== possibly lost: 0 bytes in 0 blocks ==1078624== still reachable: 56 bytes in 3 blocks ==1078624== suppressed: 700,719 bytes in 9,375 blocks ==1078624== Reachable blocks (those to which a pointer was found) are not shown. ==1078624== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1078624== ==1078624== For lists of detected and suppressed errors, rerun with: -s ==1078624== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)