==1090888== Memcheck, a memory error detector ==1090888== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1090888== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1090888== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1090888== Parent PID: 1072768 ==1090888== ==1090888== ==1090888== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1090888== Open file descriptor 12: ==1090888== at 0x101BD22D: pipe (pipe.c:29) ==1090888== by 0x18B2307D: ??? ==1090888== by 0x1408C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1090888== by 0xF9E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1090888== by 0xF979D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1090888== by 0xE650D38: PetscInitialize (pinit.c:924) ==1090888== by 0xE52468F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1090888== by 0xE5246DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1090888== by 0x13334F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1090888== by 0x12CDCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1090888== by 0x12F620: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1090888== by 0x12F4C1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1090888== by 0x12FB57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1090888== by 0x12B100: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1090888== ==1090888== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1090888== at 0x101C1BCC: __open_nocancel (open64_nocancel.c:39) ==1090888== by 0x10145C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1090888== by 0xF8DA822: ??? ==1090888== by 0xF8DA96F: ??? ==1090888== by 0x141316DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1090888== by 0x14131938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1090888== by 0x140E7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1090888== by 0x1408C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1090888== by 0xF9E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1090888== by 0xF979D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1090888== by 0xE650D38: PetscInitialize (pinit.c:924) ==1090888== by 0xE52468F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1090888== by 0xE5246DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1090888== by 0x13334F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1090888== by 0x12CDCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1090888== by 0x12F620: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1090888== by 0x12F4C1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1090888== by 0x12FB57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1090888== by 0x12B100: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1090888== ==1090888== Open file descriptor 116: ==1090888== ==1090888== ==1090888== Open file descriptor 112: ==1090888== ==1090888== ==1090888== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1090888== ==1090888== ==1090888== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1090888== ==1090888== ==1090888== ==1090888== HEAP SUMMARY: ==1090888== in use at exit: 700,775 bytes in 9,378 blocks ==1090888== total heap usage: 1,399,094 allocs, 1,389,716 frees, 1,413,214,455 bytes allocated ==1090888== ==1090888== LEAK SUMMARY: ==1090888== definitely lost: 0 bytes in 0 blocks ==1090888== indirectly lost: 0 bytes in 0 blocks ==1090888== possibly lost: 0 bytes in 0 blocks ==1090888== still reachable: 56 bytes in 3 blocks ==1090888== suppressed: 700,719 bytes in 9,375 blocks ==1090888== Reachable blocks (those to which a pointer was found) are not shown. ==1090888== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1090888== ==1090888== For lists of detected and suppressed errors, rerun with: -s ==1090888== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)