==1135359== Memcheck, a memory error detector ==1135359== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1135359== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1135359== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1135359== Parent PID: 1133807 ==1135359== ==1135359== ==1135359== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1135359== Open file descriptor 12: ==1135359== at 0xE71C22D: pipe (pipe.c:29) ==1135359== by 0x18AEF07D: ??? ==1135359== by 0x130914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1135359== by 0xE36B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1135359== by 0xE304D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1135359== by 0xCFFBD38: PetscInitialize (pinit.c:924) ==1135359== by 0xCE6D68F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1135359== by 0xCE6D6DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1135359== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1135359== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1135359== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1135359== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1135359== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1135359== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1135359== ==1135359== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1135359== at 0xE720BCC: __open_nocancel (open64_nocancel.c:39) ==1135359== by 0xE6A4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1135359== by 0xCEA5822: ??? ==1135359== by 0xCEA596F: ??? ==1135359== by 0x131366DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1135359== by 0x13136938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1135359== by 0x130EC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1135359== by 0x130912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1135359== by 0xE36B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1135359== by 0xE304D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1135359== by 0xCFFBD38: PetscInitialize (pinit.c:924) ==1135359== by 0xCE6D68F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1135359== by 0xCE6D6DD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1135359== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1135359== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1135359== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1135359== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1135359== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1135359== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1135359== ==1135359== Open file descriptor 116: ==1135359== ==1135359== ==1135359== Open file descriptor 112: ==1135359== ==1135359== ==1135359== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1135359== ==1135359== ==1135359== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1135359== ==1135359== ==1135359== ==1135359== HEAP SUMMARY: ==1135359== in use at exit: 700,743 bytes in 9,377 blocks ==1135359== total heap usage: 167,815 allocs, 158,438 frees, 1,364,605,260 bytes allocated ==1135359== ==1135359== LEAK SUMMARY: ==1135359== definitely lost: 0 bytes in 0 blocks ==1135359== indirectly lost: 0 bytes in 0 blocks ==1135359== possibly lost: 0 bytes in 0 blocks ==1135359== still reachable: 24 bytes in 2 blocks ==1135359== suppressed: 700,719 bytes in 9,375 blocks ==1135359== Reachable blocks (those to which a pointer was found) are not shown. ==1135359== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1135359== ==1135359== For lists of detected and suppressed errors, rerun with: -s ==1135359== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)