==1263366== Memcheck, a memory error detector ==1263366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1263366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1263366== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info ==1263366== Parent PID: 1240504 ==1263366== ==1263366== ==1263366== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1263366== Open file descriptor 12: ==1263366== at 0xA8A322D: pipe (pipe.c:29) ==1263366== by 0x1446307D: ??? ==1263366== by 0xFC674CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263366== by 0xBFB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263366== by 0xBF4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263366== by 0xAC44D38: PetscInitialize (pinit.c:924) ==1263366== by 0xA18C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263366== by 0xA18C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263366== by 0x12B810: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263366== by 0x12539D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263366== by 0x1277A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263366== by 0x1276A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263366== by 0x127CB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263366== by 0x123BA0: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) ==1263366== ==1263366== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1263366== at 0xA8A7BCC: __open_nocancel (open64_nocancel.c:39) ==1263366== by 0xA82BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1263366== by 0xA1C4822: ??? ==1263366== by 0xA1C496F: ??? ==1263366== by 0xFD0C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263366== by 0xFD0C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263366== by 0xFCC2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263366== by 0xFC672DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263366== by 0xBFB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263366== by 0xBF4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263366== by 0xAC44D38: PetscInitialize (pinit.c:924) ==1263366== by 0xA18C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263366== by 0xA18C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263366== by 0x12B810: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263366== by 0x12539D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263366== by 0x1277A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263366== by 0x1276A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263366== by 0x127CB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263366== by 0x123BA0: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) ==1263366== ==1263366== Open file descriptor 116: ==1263366== ==1263366== ==1263366== Open file descriptor 112: ==1263366== ==1263366== ==1263366== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt ==1263366== ==1263366== ==1263366== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1263366== ==1263366== ==1263366== ==1263366== HEAP SUMMARY: ==1263366== in use at exit: 707,440 bytes in 9,495 blocks ==1263366== total heap usage: 321,661 allocs, 312,166 frees, 1,413,062,723 bytes allocated ==1263366== ==1263366== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1263366== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1263366== by 0x92B68A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1263366== by 0x92B4B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1263366== by 0x92B7AE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1263366== by 0x92B7B09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1263366== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1263366== by 0x4006567: call_init (dl-init.c:33) ==1263366== by 0x4006567: _dl_init (dl-init.c:117) ==1263366== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1263366== by 0x3: ??? ==1263366== by 0x1FFF000302: ??? ==1263366== by 0x1FFF00037C: ??? ==1263366== by 0x1FFF00038A: ??? ==1263366== by 0x1FFF000397: ??? ==1263366== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1263366== LEAK SUMMARY: ==1263366== definitely lost: 448 bytes in 8 blocks ==1263366== indirectly lost: 0 bytes in 0 blocks ==1263366== possibly lost: 0 bytes in 0 blocks ==1263366== still reachable: 5,848 bytes in 106 blocks ==1263366== suppressed: 701,144 bytes in 9,381 blocks ==1263366== Reachable blocks (those to which a pointer was found) are not shown. ==1263366== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1263366== ==1263366== For lists of detected and suppressed errors, rerun with: -s ==1263366== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 42 from 34)