==1242238== Memcheck, a memory error detector ==1242238== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1242238== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1242238== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info ==1242238== Parent PID: 1240504 ==1242238== ==1242238== ==1242238== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1242238== Open file descriptor 12: ==1242238== at 0xFA5722D: pipe (pipe.c:29) ==1242238== by 0x1996F07D: ??? ==1242238== by 0x14F704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1242238== by 0x11737418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1242238== by 0x116D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1242238== by 0x103C7D38: PetscInitialize (pinit.c:924) ==1242238== by 0xF35C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1242238== by 0xF35C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1242238== by 0x1284E0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1242238== by 0x12255D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1242238== by 0x124AD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1242238== by 0x1249D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1242238== by 0x124FE3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1242238== by 0x120D60: main (TestCellwiseDataGradient.cpp:18) ==1242238== ==1242238== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1242238== at 0xFA5BBCC: __open_nocancel (open64_nocancel.c:39) ==1242238== by 0xF9DFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1242238== by 0xF394822: ??? ==1242238== by 0xF39496F: ??? ==1242238== by 0x150156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1242238== by 0x15015938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1242238== by 0x14FCB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1242238== by 0x14F702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1242238== by 0x11737418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1242238== by 0x116D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1242238== by 0x103C7D38: PetscInitialize (pinit.c:924) ==1242238== by 0xF35C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1242238== by 0xF35C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1242238== by 0x1284E0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1242238== by 0x12255D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1242238== by 0x124AD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1242238== by 0x1249D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1242238== by 0x124FE3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1242238== by 0x120D60: main (TestCellwiseDataGradient.cpp:18) ==1242238== ==1242238== Open file descriptor 116: ==1242238== ==1242238== ==1242238== Open file descriptor 112: ==1242238== ==1242238== ==1242238== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt ==1242238== ==1242238== ==1242238== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1242238== ==1242238== ==1242238== ==1242238== HEAP SUMMARY: ==1242238== in use at exit: 707,047 bytes in 9,490 blocks ==1242238== total heap usage: 421,138 allocs, 411,648 frees, 1,368,655,743 bytes allocated ==1242238== ==1242238== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1242238== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1242238== by 0xE50B8A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1242238== by 0xE509B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1242238== by 0xE50CAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1242238== by 0xE50CB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1242238== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1242238== by 0x4006567: call_init (dl-init.c:33) ==1242238== by 0x4006567: _dl_init (dl-init.c:117) ==1242238== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1242238== by 0x3: ??? ==1242238== by 0x1FFF000312: ??? ==1242238== by 0x1FFF000383: ??? ==1242238== by 0x1FFF000391: ??? ==1242238== by 0x1FFF00039E: ??? ==1242238== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1242238== LEAK SUMMARY: ==1242238== definitely lost: 448 bytes in 8 blocks ==1242238== indirectly lost: 0 bytes in 0 blocks ==1242238== possibly lost: 0 bytes in 0 blocks ==1242238== still reachable: 5,880 bytes in 107 blocks ==1242238== suppressed: 700,719 bytes in 9,375 blocks ==1242238== Reachable blocks (those to which a pointer was found) are not shown. ==1242238== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1242238== ==1242238== For lists of detected and suppressed errors, rerun with: -s ==1242238== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)