==1263495== Memcheck, a memory error detector ==1263495== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1263495== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1263495== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==1263495== Parent PID: 1240504 ==1263495== ==1263495== ==1263495== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1263495== Open file descriptor 12: ==1263495== at 0xA8A322D: pipe (pipe.c:29) ==1263495== by 0x1446307D: ??? ==1263495== by 0xFC674CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263495== by 0xBFB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263495== by 0xBF4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263495== by 0xAC44D38: PetscInitialize (pinit.c:924) ==1263495== by 0xA18C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263495== by 0xA18C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263495== by 0x12D0CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263495== by 0x12653D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263495== by 0x128EF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263495== by 0x128DEF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263495== by 0x129403: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263495== by 0x124D40: main (TestCheckpointing.cpp:18) ==1263495== ==1263495== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1263495== at 0xA8A7BCC: __open_nocancel (open64_nocancel.c:39) ==1263495== by 0xA82BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1263495== by 0xA1C4822: ??? ==1263495== by 0xA1C496F: ??? ==1263495== by 0xFD0C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263495== by 0xFD0C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263495== by 0xFCC2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263495== by 0xFC672DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263495== by 0xBFB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263495== by 0xBF4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263495== by 0xAC44D38: PetscInitialize (pinit.c:924) ==1263495== by 0xA18C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263495== by 0xA18C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263495== by 0x12D0CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263495== by 0x12653D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263495== by 0x128EF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263495== by 0x128DEF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263495== by 0x129403: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263495== by 0x124D40: main (TestCheckpointing.cpp:18) ==1263495== ==1263495== Open file descriptor 116: ==1263495== ==1263495== ==1263495== Open file descriptor 112: ==1263495== ==1263495== ==1263495== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==1263495== ==1263495== ==1263495== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1263495== ==1263495== ==1263495== ==1263495== HEAP SUMMARY: ==1263495== in use at exit: 707,511 bytes in 9,499 blocks ==1263495== total heap usage: 834,190 allocs, 824,691 frees, 1,457,536,737 bytes allocated ==1263495== ==1263495== 448 bytes in 8 blocks are definitely lost in loss record 55 of 83 ==1263495== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1263495== by 0x92B68A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1263495== by 0x92B4B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1263495== by 0x92B7AE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1263495== by 0x92B7B09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1263495== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1263495== by 0x4006567: call_init (dl-init.c:33) ==1263495== by 0x4006567: _dl_init (dl-init.c:117) ==1263495== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1263495== by 0x3: ??? ==1263495== by 0x1FFF00032A: ??? ==1263495== by 0x1FFF00038F: ??? ==1263495== by 0x1FFF00039D: ??? ==1263495== by 0x1FFF0003AA: ??? ==1263495== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1263495== LEAK SUMMARY: ==1263495== definitely lost: 448 bytes in 8 blocks ==1263495== indirectly lost: 0 bytes in 0 blocks ==1263495== possibly lost: 0 bytes in 0 blocks ==1263495== still reachable: 5,848 bytes in 106 blocks ==1263495== suppressed: 701,215 bytes in 9,385 blocks ==1263495== Reachable blocks (those to which a pointer was found) are not shown. ==1263495== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1263495== ==1263495== For lists of detected and suppressed errors, rerun with: -s ==1263495== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 64 from 38)