==1253301== Memcheck, a memory error detector ==1253301== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1253301== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1253301== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info ==1253301== Parent PID: 1240504 ==1253301== ==1253301== ==1253301== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1253301== Open file descriptor 12: ==1253301== at 0x1128322D: pipe (pipe.c:29) ==1253301== by 0x1996D07D: ??? ==1253301== by 0x14F234CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1253301== by 0x10AA6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1253301== by 0x10A3FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1253301== by 0xF736D38: PetscInitialize (pinit.c:924) ==1253301== by 0xF5A8717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1253301== by 0xF5A8765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1253301== by 0x26C2AD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1253301== by 0x263357: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1253301== by 0x268010: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1253301== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1253301== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1253301== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==1253301== ==1253301== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1253301== at 0x11287BCC: __open_nocancel (open64_nocancel.c:39) ==1253301== by 0x1120BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1253301== by 0xF5E0822: ??? ==1253301== by 0xF5E096F: ??? ==1253301== by 0x14FC86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1253301== by 0x14FC8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1253301== by 0x14F7E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1253301== by 0x14F232DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1253301== by 0x10AA6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1253301== by 0x10A3FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1253301== by 0xF736D38: PetscInitialize (pinit.c:924) ==1253301== by 0xF5A8717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1253301== by 0xF5A8765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1253301== by 0x26C2AD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1253301== by 0x263357: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1253301== by 0x268010: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1253301== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1253301== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1253301== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==1253301== ==1253301== Open file descriptor 116: ==1253301== ==1253301== ==1253301== Open file descriptor 112: ==1253301== ==1253301== ==1253301== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt ==1253301== ==1253301== ==1253301== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1253301== ==1253301== ==1253301== ==1253301== HEAP SUMMARY: ==1253301== in use at exit: 706,976 bytes in 9,486 blocks ==1253301== total heap usage: 3,813,085 allocs, 3,803,599 frees, 1,523,741,997 bytes allocated ==1253301== ==1253301== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1253301== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1253301== by 0xE7598A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1253301== by 0xE757B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1253301== by 0xE75AAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1253301== by 0xE75AB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1253301== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1253301== by 0x4006567: call_init (dl-init.c:33) ==1253301== by 0x4006567: _dl_init (dl-init.c:117) ==1253301== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1253301== by 0x3: ??? ==1253301== by 0x1FFF0002F2: ??? ==1253301== by 0x1FFF000373: ??? ==1253301== by 0x1FFF000381: ??? ==1253301== by 0x1FFF00038E: ??? ==1253301== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1253301== LEAK SUMMARY: ==1253301== definitely lost: 448 bytes in 8 blocks ==1253301== indirectly lost: 0 bytes in 0 blocks ==1253301== possibly lost: 0 bytes in 0 blocks ==1253301== still reachable: 5,880 bytes in 107 blocks ==1253301== suppressed: 700,648 bytes in 9,371 blocks ==1253301== Reachable blocks (those to which a pointer was found) are not shown. ==1253301== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1253301== ==1253301== For lists of detected and suppressed errors, rerun with: -s ==1253301== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)