==1261650== Memcheck, a memory error detector ==1261650== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1261650== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1261650== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info ==1261650== Parent PID: 1240504 ==1261650== ==1261650== ==1261650== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1261650== Open file descriptor 12: ==1261650== at 0xBC7B22D: pipe (pipe.c:29) ==1261650== by 0x1446507D: ??? ==1261650== by 0xFC674CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1261650== by 0xC010418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261650== by 0xBFA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261650== by 0xA332D38: PetscInitialize (pinit.c:924) ==1261650== by 0xA1A4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1261650== by 0xA1A4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1261650== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1261650== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1261650== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1261650== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1261650== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1261650== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==1261650== ==1261650== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1261650== at 0xBC7FBCC: __open_nocancel (open64_nocancel.c:39) ==1261650== by 0xBC03C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1261650== by 0xA1DC822: ??? ==1261650== by 0xA1DC96F: ??? ==1261650== by 0xFD0C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261650== by 0xFD0C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261650== by 0xFCC2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261650== by 0xFC672DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1261650== by 0xC010418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261650== by 0xBFA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261650== by 0xA332D38: PetscInitialize (pinit.c:924) ==1261650== by 0xA1A4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1261650== by 0xA1A4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1261650== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1261650== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1261650== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1261650== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1261650== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1261650== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==1261650== ==1261650== Open file descriptor 116: ==1261650== ==1261650== ==1261650== Open file descriptor 112: ==1261650== ==1261650== ==1261650== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt ==1261650== ==1261650== ==1261650== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1261650== ==1261650== ==1261650== ==1261650== HEAP SUMMARY: ==1261650== in use at exit: 707,031 bytes in 9,489 blocks ==1261650== total heap usage: 123,053 allocs, 113,564 frees, 1,369,405,234 bytes allocated ==1261650== ==1261650== 448 bytes in 8 blocks are definitely lost in loss record 52 of 77 ==1261650== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1261650== by 0x92B68A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1261650== by 0x92B4B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1261650== by 0x92B7AE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1261650== by 0x92B7B09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1261650== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1261650== by 0x4006567: call_init (dl-init.c:33) ==1261650== by 0x4006567: _dl_init (dl-init.c:117) ==1261650== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1261650== by 0x3: ??? ==1261650== by 0x1FFF00031A: ??? ==1261650== by 0x1FFF000388: ??? ==1261650== by 0x1FFF000396: ??? ==1261650== by 0x1FFF0003A3: ??? ==1261650== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1261650== LEAK SUMMARY: ==1261650== definitely lost: 448 bytes in 8 blocks ==1261650== indirectly lost: 0 bytes in 0 blocks ==1261650== possibly lost: 0 bytes in 0 blocks ==1261650== still reachable: 5,848 bytes in 106 blocks ==1261650== suppressed: 700,735 bytes in 9,375 blocks ==1261650== Reachable blocks (those to which a pointer was found) are not shown. ==1261650== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1261650== ==1261650== For lists of detected and suppressed errors, rerun with: -s ==1261650== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 35 from 35)