==1263289== Memcheck, a memory error detector ==1263289== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1263289== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1263289== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1263289== Parent PID: 1240504 ==1263289== ==1263289== Warning: invalid file descriptor -1 in syscall close() ==1263289== ==1263289== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1263289== Open file descriptor 12: ==1263289== at 0xC1F022D: pipe (pipe.c:29) ==1263289== by 0x1446507D: ??? ==1263289== by 0x101264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263289== by 0xBAE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263289== by 0xBA79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263289== by 0xA3BBD38: PetscInitialize (pinit.c:924) ==1263289== by 0xA22B717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263289== by 0xA22B765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263289== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263289== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263289== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263289== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263289== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263289== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==1263289== ==1263289== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1263289== at 0xC1F4BCC: __open_nocancel (open64_nocancel.c:39) ==1263289== by 0xC178C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1263289== by 0xA263822: ??? ==1263289== by 0xA26396F: ??? ==1263289== by 0x101CB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263289== by 0x101CB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263289== by 0x10181922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1263289== by 0x101262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1263289== by 0xBAE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263289== by 0xBA79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1263289== by 0xA3BBD38: PetscInitialize (pinit.c:924) ==1263289== by 0xA22B717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1263289== by 0xA22B765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1263289== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1263289== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1263289== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1263289== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1263289== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1263289== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==1263289== ==1263289== Open file descriptor 116: ==1263289== ==1263289== ==1263289== Open file descriptor 112: ==1263289== ==1263289== ==1263289== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1263289== ==1263289== ==1263289== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1263289== ==1263289== ==1263289== ==1263289== HEAP SUMMARY: ==1263289== in use at exit: 707,440 bytes in 9,495 blocks ==1263289== total heap usage: 6,602,705 allocs, 6,593,210 frees, 4,030,451,672 bytes allocated ==1263289== ==1263289== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1263289== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1263289== by 0x92B68A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1263289== by 0x92B4B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1263289== by 0x92B7AE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1263289== by 0x92B7B09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1263289== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1263289== by 0x4006567: call_init (dl-init.c:33) ==1263289== by 0x4006567: _dl_init (dl-init.c:117) ==1263289== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1263289== by 0x3: ??? ==1263289== by 0x1FFF000322: ??? ==1263289== by 0x1FFF00038B: ??? ==1263289== by 0x1FFF000399: ??? ==1263289== by 0x1FFF0003A6: ??? ==1263289== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1263289== LEAK SUMMARY: ==1263289== definitely lost: 448 bytes in 8 blocks ==1263289== indirectly lost: 0 bytes in 0 blocks ==1263289== possibly lost: 0 bytes in 0 blocks ==1263289== still reachable: 5,848 bytes in 106 blocks ==1263289== suppressed: 701,144 bytes in 9,381 blocks ==1263289== Reachable blocks (those to which a pointer was found) are not shown. ==1263289== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1263289== ==1263289== For lists of detected and suppressed errors, rerun with: -s ==1263289== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 128 from 34)