==1260677== Memcheck, a memory error detector ==1260677== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1260677== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1260677== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==1260677== Parent PID: 1240504 ==1260677== ==1260677== ==1260677== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1260677== Open file descriptor 12: ==1260677== at 0x10DA422D: pipe (pipe.c:29) ==1260677== by 0x1B65107D: ??? ==1260677== by 0x157F24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1260677== by 0x106AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260677== by 0x10647D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260677== by 0xF33ED38: PetscInitialize (pinit.c:924) ==1260677== by 0xF1B0717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1260677== by 0xF1B0765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1260677== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1260677== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1260677== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1260677== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1260677== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1260677== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1260677== ==1260677== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1260677== at 0x10DA8BCC: __open_nocancel (open64_nocancel.c:39) ==1260677== by 0x10D2CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1260677== by 0xF1E8822: ??? ==1260677== by 0xF1E896F: ??? ==1260677== by 0x158976DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260677== by 0x15897938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260677== by 0x1584D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260677== by 0x157F22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1260677== by 0x106AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260677== by 0x10647D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260677== by 0xF33ED38: PetscInitialize (pinit.c:924) ==1260677== by 0xF1B0717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1260677== by 0xF1B0765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1260677== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1260677== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1260677== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1260677== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1260677== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1260677== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1260677== ==1260677== Open file descriptor 116: ==1260677== ==1260677== ==1260677== Open file descriptor 112: ==1260677== ==1260677== ==1260677== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==1260677== ==1260677== ==1260677== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1260677== ==1260677== ==1260677== ==1260677== HEAP SUMMARY: ==1260677== in use at exit: 707,127 bytes in 9,491 blocks ==1260677== total heap usage: 864,303 allocs, 854,812 frees, 1,475,914,730 bytes allocated ==1260677== ==1260677== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==1260677== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1260677== by 0x11DF38A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1260677== by 0x11DF1B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1260677== by 0x11DF4AE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1260677== by 0x11DF4B09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1260677== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1260677== by 0x4006567: call_init (dl-init.c:33) ==1260677== by 0x4006567: _dl_init (dl-init.c:117) ==1260677== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1260677== by 0x3: ??? ==1260677== by 0x1FFF000306: ??? ==1260677== by 0x1FFF00037D: ??? ==1260677== by 0x1FFF00038B: ??? ==1260677== by 0x1FFF000398: ??? ==1260677== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1260677== LEAK SUMMARY: ==1260677== definitely lost: 448 bytes in 8 blocks ==1260677== indirectly lost: 0 bytes in 0 blocks ==1260677== possibly lost: 0 bytes in 0 blocks ==1260677== still reachable: 5,944 bytes in 108 blocks ==1260677== suppressed: 700,735 bytes in 9,375 blocks ==1260677== Reachable blocks (those to which a pointer was found) are not shown. ==1260677== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1260677== ==1260677== For lists of detected and suppressed errors, rerun with: -s ==1260677== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)