==1243075== Memcheck, a memory error detector ==1243075== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1243075== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1243075== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1243075== Parent PID: 1240504 ==1243075== ==1243075== ==1243075== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1243075== Open file descriptor 12: ==1243075== at 0x1103722D: pipe (pipe.c:29) ==1243075== by 0x1996F07D: ??? ==1243075== by 0x14ED24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1243075== by 0x1085A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1243075== by 0x107F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1243075== by 0xF4EAD38: PetscInitialize (pinit.c:924) ==1243075== by 0xF35C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1243075== by 0xF35C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1243075== by 0x210737: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1243075== by 0x208C73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1243075== by 0x20C728: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1243075== by 0x20C5C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1243075== by 0x20CC5F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1243075== by 0x206F60: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==1243075== ==1243075== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1243075== at 0x1103BBCC: __open_nocancel (open64_nocancel.c:39) ==1243075== by 0x10FBFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1243075== by 0xF394822: ??? ==1243075== by 0xF39496F: ??? ==1243075== by 0x14F776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1243075== by 0x14F77938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1243075== by 0x14F2D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1243075== by 0x14ED22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1243075== by 0x1085A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1243075== by 0x107F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1243075== by 0xF4EAD38: PetscInitialize (pinit.c:924) ==1243075== by 0xF35C717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1243075== by 0xF35C765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1243075== by 0x210737: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1243075== by 0x208C73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1243075== by 0x20C728: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1243075== by 0x20C5C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1243075== by 0x20CC5F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1243075== by 0x206F60: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==1243075== ==1243075== Open file descriptor 116: ==1243075== ==1243075== ==1243075== Open file descriptor 112: ==1243075== ==1243075== ==1243075== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==1243075== ==1243075== ==1243075== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1243075== ==1243075== ==1243075== ==1243075== HEAP SUMMARY: ==1243075== in use at exit: 706,976 bytes in 9,486 blocks ==1243075== total heap usage: 9,623,790 allocs, 9,614,304 frees, 2,573,381,344 bytes allocated ==1243075== ==1243075== 448 bytes in 8 blocks are definitely lost in loss record 49 of 74 ==1243075== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1243075== by 0xE50B8A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1243075== by 0xE509B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1243075== by 0xE50CAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1243075== by 0xE50CB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1243075== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1243075== by 0x4006567: call_init (dl-init.c:33) ==1243075== by 0x4006567: _dl_init (dl-init.c:117) ==1243075== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1243075== by 0x3: ??? ==1243075== by 0x1FFF0002DA: ??? ==1243075== by 0x1FFF000368: ??? ==1243075== by 0x1FFF000376: ??? ==1243075== by 0x1FFF000383: ??? ==1243075== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1243075== LEAK SUMMARY: ==1243075== definitely lost: 448 bytes in 8 blocks ==1243075== indirectly lost: 0 bytes in 0 blocks ==1243075== possibly lost: 0 bytes in 0 blocks ==1243075== still reachable: 5,880 bytes in 107 blocks ==1243075== suppressed: 700,648 bytes in 9,371 blocks ==1243075== Reachable blocks (those to which a pointer was found) are not shown. ==1243075== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1243075== ==1243075== For lists of detected and suppressed errors, rerun with: -s ==1243075== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 31 from 31)