==1261323== Memcheck, a memory error detector ==1261323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1261323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1261323== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1261323== Parent PID: 1240504 ==1261323== ==1261323== ==1261323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1261323== Open file descriptor 12: ==1261323== at 0x127EF22D: pipe (pipe.c:29) ==1261323== by 0x1B65107D: ??? ==1261323== by 0x167B34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1261323== by 0x120F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261323== by 0x12092D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261323== by 0x10D69D38: PetscInitialize (pinit.c:924) ==1261323== by 0x10C3D717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1261323== by 0x10C3D765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1261323== by 0x12B557: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1261323== by 0x12571D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1261323== by 0x127B58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1261323== by 0x127A54: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1261323== by 0x128067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1261323== by 0x123F20: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==1261323== ==1261323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1261323== at 0x127F3BCC: __open_nocancel (open64_nocancel.c:39) ==1261323== by 0x12777C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1261323== by 0x11FF3822: ??? ==1261323== by 0x11FF396F: ??? ==1261323== by 0x168586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261323== by 0x16858938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261323== by 0x1680E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1261323== by 0x167B32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1261323== by 0x120F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261323== by 0x12092D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1261323== by 0x10D69D38: PetscInitialize (pinit.c:924) ==1261323== by 0x10C3D717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1261323== by 0x10C3D765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1261323== by 0x12B557: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1261323== by 0x12571D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1261323== by 0x127B58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1261323== by 0x127A54: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1261323== by 0x128067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1261323== by 0x123F20: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==1261323== ==1261323== Open file descriptor 116: ==1261323== ==1261323== ==1261323== Open file descriptor 112: ==1261323== ==1261323== ==1261323== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==1261323== ==1261323== ==1261323== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1261323== ==1261323== ==1261323== ==1261323== HEAP SUMMARY: ==1261323== in use at exit: 707,063 bytes in 9,490 blocks ==1261323== total heap usage: 1,754,712 allocs, 1,745,222 frees, 1,529,546,305 bytes allocated ==1261323== ==1261323== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1261323== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1261323== by 0xFDEE8A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1261323== by 0xFDECB3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1261323== by 0xFDEFAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1261323== by 0xFDEFB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1261323== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1261323== by 0x4006567: call_init (dl-init.c:33) ==1261323== by 0x4006567: _dl_init (dl-init.c:117) ==1261323== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1261323== by 0x3: ??? ==1261323== by 0x1FFF0002F6: ??? ==1261323== by 0x1FFF000376: ??? ==1261323== by 0x1FFF000384: ??? ==1261323== by 0x1FFF000391: ??? ==1261323== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1261323== LEAK SUMMARY: ==1261323== definitely lost: 448 bytes in 8 blocks ==1261323== indirectly lost: 0 bytes in 0 blocks ==1261323== possibly lost: 0 bytes in 0 blocks ==1261323== still reachable: 5,880 bytes in 107 blocks ==1261323== suppressed: 700,735 bytes in 9,375 blocks ==1261323== Reachable blocks (those to which a pointer was found) are not shown. ==1261323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1261323== ==1261323== For lists of detected and suppressed errors, rerun with: -s ==1261323== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)