==1258684== Memcheck, a memory error detector ==1258684== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1258684== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1258684== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1258684== Parent PID: 1240504 ==1258684== ==1258684== ==1258684== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1258684== Open file descriptor 12: ==1258684== at 0xDD7E22D: pipe (pipe.c:29) ==1258684== by 0x1996F07D: ??? ==1258684== by 0x14F704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1258684== by 0x11737418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258684== by 0x116D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258684== by 0x103C7D38: PetscInitialize (pinit.c:924) ==1258684== by 0xD681717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1258684== by 0xD681765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1258684== by 0x12EAC6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1258684== by 0x129E6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1258684== by 0x12C62E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1258684== by 0x12C4CF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1258684== by 0x12CB65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1258684== by 0x1281A0: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1258684== ==1258684== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1258684== at 0xDD82BCC: __open_nocancel (open64_nocancel.c:39) ==1258684== by 0xDD06C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1258684== by 0xD6B9822: ??? ==1258684== by 0xD6B996F: ??? ==1258684== by 0x150156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258684== by 0x15015938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258684== by 0x14FCB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258684== by 0x14F702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1258684== by 0x11737418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258684== by 0x116D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258684== by 0x103C7D38: PetscInitialize (pinit.c:924) ==1258684== by 0xD681717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1258684== by 0xD681765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1258684== by 0x12EAC6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1258684== by 0x129E6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1258684== by 0x12C62E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1258684== by 0x12C4CF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1258684== by 0x12CB65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1258684== by 0x1281A0: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1258684== ==1258684== Open file descriptor 116: ==1258684== ==1258684== ==1258684== Open file descriptor 112: ==1258684== ==1258684== ==1258684== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==1258684== ==1258684== ==1258684== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1258684== ==1258684== ==1258684== ==1258684== HEAP SUMMARY: ==1258684== in use at exit: 706,976 bytes in 9,486 blocks ==1258684== total heap usage: 40,687,210 allocs, 40,677,724 frees, 3,844,664,040 bytes allocated ==1258684== ==1258684== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1258684== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1258684== by 0xF3CB8A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1258684== by 0xF3C9B3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1258684== by 0xF3CCAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1258684== by 0xF3CCB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1258684== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1258684== by 0x4006567: call_init (dl-init.c:33) ==1258684== by 0x4006567: _dl_init (dl-init.c:117) ==1258684== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1258684== by 0x3: ??? ==1258684== by 0x1FFF0002F2: ??? ==1258684== by 0x1FFF000373: ??? ==1258684== by 0x1FFF000381: ??? ==1258684== by 0x1FFF00038E: ??? ==1258684== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1258684== LEAK SUMMARY: ==1258684== definitely lost: 448 bytes in 8 blocks ==1258684== indirectly lost: 0 bytes in 0 blocks ==1258684== possibly lost: 0 bytes in 0 blocks ==1258684== still reachable: 5,880 bytes in 107 blocks ==1258684== suppressed: 700,648 bytes in 9,371 blocks ==1258684== Reachable blocks (those to which a pointer was found) are not shown. ==1258684== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1258684== ==1258684== For lists of detected and suppressed errors, rerun with: -s ==1258684== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 36 from 36)