==1260781== Memcheck, a memory error detector ==1260781== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1260781== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1260781== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1260781== Parent PID: 1240504 ==1260781== ==1260781== ==1260781== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1260781== Open file descriptor 12: ==1260781== at 0x10A5F22D: pipe (pipe.c:29) ==1260781== by 0x1B65107D: ??? ==1260781== by 0x157F24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1260781== by 0x106AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260781== by 0x10647D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260781== by 0xF33ED38: PetscInitialize (pinit.c:924) ==1260781== by 0xF1B0717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1260781== by 0xF1B0765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1260781== by 0x1252F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1260781== by 0x120663: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1260781== by 0x122CA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1260781== by 0x122BA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1260781== by 0x1231B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1260781== by 0x11EE65: main (TestWntCellCycleOdeSystem.cpp:18) ==1260781== ==1260781== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1260781== at 0x10A63BCC: __open_nocancel (open64_nocancel.c:39) ==1260781== by 0x109E7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1260781== by 0xF1E8822: ??? ==1260781== by 0xF1E896F: ??? ==1260781== by 0x158976DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260781== by 0x15897938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260781== by 0x1584D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1260781== by 0x157F22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1260781== by 0x106AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260781== by 0x10647D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1260781== by 0xF33ED38: PetscInitialize (pinit.c:924) ==1260781== by 0xF1B0717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1260781== by 0xF1B0765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1260781== by 0x1252F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1260781== by 0x120663: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1260781== by 0x122CA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1260781== by 0x122BA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1260781== by 0x1231B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1260781== by 0x11EE65: main (TestWntCellCycleOdeSystem.cpp:18) ==1260781== ==1260781== Open file descriptor 116: ==1260781== ==1260781== ==1260781== Open file descriptor 112: ==1260781== ==1260781== ==1260781== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==1260781== ==1260781== ==1260781== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1260781== ==1260781== ==1260781== ==1260781== HEAP SUMMARY: ==1260781== in use at exit: 707,031 bytes in 9,489 blocks ==1260781== total heap usage: 187,886 allocs, 178,397 frees, 1,434,938,983 bytes allocated ==1260781== ==1260781== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1260781== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1260781== by 0x11AAE8A5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1260781== by 0x11AACB3E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1260781== by 0x11AAFAE4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1260781== by 0x11AAFB09: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1260781== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1260781== by 0x4006567: call_init (dl-init.c:33) ==1260781== by 0x4006567: _dl_init (dl-init.c:117) ==1260781== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1260781== by 0x3: ??? ==1260781== by 0x1FFF00031A: ??? ==1260781== by 0x1FFF000387: ??? ==1260781== by 0x1FFF000395: ??? ==1260781== by 0x1FFF0003A2: ??? ==1260781== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1260781== LEAK SUMMARY: ==1260781== definitely lost: 448 bytes in 8 blocks ==1260781== indirectly lost: 0 bytes in 0 blocks ==1260781== possibly lost: 0 bytes in 0 blocks ==1260781== still reachable: 5,848 bytes in 106 blocks ==1260781== suppressed: 700,735 bytes in 9,375 blocks ==1260781== Reachable blocks (those to which a pointer was found) are not shown. ==1260781== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1260781== ==1260781== For lists of detected and suppressed errors, rerun with: -s ==1260781== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)