==1509399== Memcheck, a memory error detector ==1509399== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1509399== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1509399== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1509399== Parent PID: 1509143 ==1509399== ==1509399== ==1509399== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1509399== Open file descriptor 12: ==1509399== at 0x647522D: pipe (pipe.c:29) ==1509399== by 0xAF5507D: ??? ==1509399== by 0x8F754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1509399== by 0x666F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1509399== by 0x6608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1509399== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==1509399== by 0x498A69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1509399== by 0x498A6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1509399== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1509399== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1509399== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1509399== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1509399== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1509399== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==1509399== ==1509399== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1509399== at 0x6479BCC: __open_nocancel (open64_nocancel.c:39) ==1509399== by 0x63FDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1509399== by 0x5D40822: ??? ==1509399== by 0x5D4096F: ??? ==1509399== by 0x901A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1509399== by 0x901A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1509399== by 0x8FD0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1509399== by 0x8F752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1509399== by 0x666F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1509399== by 0x6608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1509399== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==1509399== by 0x498A69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1509399== by 0x498A6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1509399== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1509399== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1509399== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1509399== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1509399== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1509399== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==1509399== ==1509399== Open file descriptor 116: ==1509399== ==1509399== ==1509399== Open file descriptor 112: ==1509399== ==1509399== ==1509399== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1509399== ==1509399== ==1509399== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1509399== ==1509399== ==1509399== ==1509399== HEAP SUMMARY: ==1509399== in use at exit: 700,775 bytes in 9,387 blocks ==1509399== total heap usage: 60,597 allocs, 51,210 frees, 1,363,739,483 bytes allocated ==1509399== ==1509399== LEAK SUMMARY: ==1509399== definitely lost: 0 bytes in 0 blocks ==1509399== indirectly lost: 0 bytes in 0 blocks ==1509399== possibly lost: 0 bytes in 0 blocks ==1509399== still reachable: 24 bytes in 2 blocks ==1509399== suppressed: 700,751 bytes in 9,385 blocks ==1509399== Reachable blocks (those to which a pointer was found) are not shown. ==1509399== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1509399== ==1509399== For lists of detected and suppressed errors, rerun with: -s ==1509399== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 36)