==1531927== Memcheck, a memory error detector ==1531927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1531927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1531927== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1531927== Parent PID: 1509143 ==1531927== ==1531927== Warning: invalid file descriptor -1 in syscall close() ==1531927== ==1531927== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1531927== Open file descriptor 12: ==1531927== at 0xBDAC22D: pipe (pipe.c:29) ==1531927== by 0x1401407D: ??? ==1531927== by 0xFCD54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1531927== by 0xB69C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1531927== by 0xB635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1531927== by 0x9F77D38: PetscInitialize (pinit.c:924) ==1531927== by 0x9DE769F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1531927== by 0x9DE76ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1531927== by 0x153E00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1531927== by 0x149A2F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1531927== by 0x14CD8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1531927== by 0x14CC2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1531927== by 0x14D2C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1531927== by 0x147D10: main (TestMonodomainProblem.cpp:19) ==1531927== ==1531927== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1531927== at 0xBDB0BCC: __open_nocancel (open64_nocancel.c:39) ==1531927== by 0xBD34C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1531927== by 0x9E1F822: ??? ==1531927== by 0x9E1F96F: ??? ==1531927== by 0xFD7A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1531927== by 0xFD7A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1531927== by 0xFD30922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1531927== by 0xFCD52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1531927== by 0xB69C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1531927== by 0xB635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1531927== by 0x9F77D38: PetscInitialize (pinit.c:924) ==1531927== by 0x9DE769F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1531927== by 0x9DE76ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1531927== by 0x153E00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1531927== by 0x149A2F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1531927== by 0x14CD8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1531927== by 0x14CC2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1531927== by 0x14D2C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1531927== by 0x147D10: main (TestMonodomainProblem.cpp:19) ==1531927== ==1531927== Open file descriptor 116: ==1531927== ==1531927== ==1531927== Open file descriptor 112: ==1531927== ==1531927== ==1531927== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1531927== ==1531927== ==1531927== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1531927== ==1531927== ==1531927== ==1531927== HEAP SUMMARY: ==1531927== in use at exit: 701,168 bytes in 9,383 blocks ==1531927== total heap usage: 6,603,283 allocs, 6,593,900 frees, 4,030,777,844 bytes allocated ==1531927== ==1531927== LEAK SUMMARY: ==1531927== definitely lost: 0 bytes in 0 blocks ==1531927== indirectly lost: 0 bytes in 0 blocks ==1531927== possibly lost: 0 bytes in 0 blocks ==1531927== still reachable: 24 bytes in 2 blocks ==1531927== suppressed: 701,144 bytes in 9,381 blocks ==1531927== Reachable blocks (those to which a pointer was found) are not shown. ==1531927== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1531927== ==1531927== For lists of detected and suppressed errors, rerun with: -s ==1531927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)