==1529771== Memcheck, a memory error detector ==1529771== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1529771== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1529771== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==1529771== Parent PID: 1509143 ==1529771== ==1529771== ==1529771== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1529771== Open file descriptor 12: ==1529771== at 0x1197322D: pipe (pipe.c:29) ==1529771== by 0x1A7C307D: ??? ==1529771== by 0x159254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1529771== by 0x1127D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1529771== by 0x11216D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1529771== by 0xFEEDD38: PetscInitialize (pinit.c:924) ==1529771== by 0xFDC169F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1529771== by 0xFDC16ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1529771== by 0x12D7A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1529771== by 0x12795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1529771== by 0x129D9C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1529771== by 0x129C98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1529771== by 0x12A2AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1529771== by 0x126160: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==1529771== ==1529771== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1529771== at 0x11977BCC: __open_nocancel (open64_nocancel.c:39) ==1529771== by 0x118FBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1529771== by 0x11177822: ??? ==1529771== by 0x1117796F: ??? ==1529771== by 0x159CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1529771== by 0x159CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1529771== by 0x15980922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1529771== by 0x159252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1529771== by 0x1127D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1529771== by 0x11216D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1529771== by 0xFEEDD38: PetscInitialize (pinit.c:924) ==1529771== by 0xFDC169F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1529771== by 0xFDC16ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1529771== by 0x12D7A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1529771== by 0x12795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1529771== by 0x129D9C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1529771== by 0x129C98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1529771== by 0x12A2AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1529771== by 0x126160: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==1529771== ==1529771== Open file descriptor 116: ==1529771== ==1529771== ==1529771== Open file descriptor 112: ==1529771== ==1529771== ==1529771== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==1529771== ==1529771== ==1529771== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1529771== ==1529771== ==1529771== ==1529771== HEAP SUMMARY: ==1529771== in use at exit: 700,720 bytes in 9,374 blocks ==1529771== total heap usage: 16,186,096 allocs, 16,176,722 frees, 2,844,184,689 bytes allocated ==1529771== ==1529771== LEAK SUMMARY: ==1529771== definitely lost: 0 bytes in 0 blocks ==1529771== indirectly lost: 0 bytes in 0 blocks ==1529771== possibly lost: 0 bytes in 0 blocks ==1529771== still reachable: 56 bytes in 3 blocks ==1529771== suppressed: 700,664 bytes in 9,371 blocks ==1529771== Reachable blocks (those to which a pointer was found) are not shown. ==1529771== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1529771== ==1529771== For lists of detected and suppressed errors, rerun with: -s ==1529771== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)