==83619== Memcheck, a memory error detector ==83619== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==83619== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==83619== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==83619== Parent PID: 61810 ==83619== ==83619== ==83619== FILE DESCRIPTORS: 9 open (3 std) at exit. ==83619== Open file descriptor 12: ==83619== at 0x1197322D: pipe (pipe.c:29) ==83619== by 0x1A7C307D: ??? ==83619== by 0x159254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==83619== by 0x1127D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==83619== by 0x11216D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==83619== by 0xFEEDD38: PetscInitialize (pinit.c:924) ==83619== by 0xFDC169F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==83619== by 0xFDC16ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==83619== by 0x12A71B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==83619== by 0x12487D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==83619== by 0x126CEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==83619== by 0x126BEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==83619== by 0x1271FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==83619== by 0x123080: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==83619== ==83619== Open file descriptor 8: /dev/shm/open_mpi.0000 ==83619== at 0x11977BCC: __open_nocancel (open64_nocancel.c:39) ==83619== by 0x118FBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==83619== by 0x11177822: ??? ==83619== by 0x1117796F: ??? ==83619== by 0x159CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==83619== by 0x159CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==83619== by 0x15980922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==83619== by 0x159252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==83619== by 0x1127D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==83619== by 0x11216D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==83619== by 0xFEEDD38: PetscInitialize (pinit.c:924) ==83619== by 0xFDC169F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==83619== by 0xFDC16ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==83619== by 0x12A71B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==83619== by 0x12487D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==83619== by 0x126CEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==83619== by 0x126BEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==83619== by 0x1271FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==83619== by 0x123080: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==83619== ==83619== Open file descriptor 112: ==83619== ==83619== ==83619== Open file descriptor 109: ==83619== ==83619== ==83619== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==83619== ==83619== ==83619== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==83619== ==83619== ==83619== ==83619== HEAP SUMMARY: ==83619== in use at exit: 700,781 bytes in 9,378 blocks ==83619== total heap usage: 1,754,219 allocs, 1,744,841 frees, 1,529,526,170 bytes allocated ==83619== ==83619== LEAK SUMMARY: ==83619== definitely lost: 0 bytes in 0 blocks ==83619== indirectly lost: 0 bytes in 0 blocks ==83619== possibly lost: 0 bytes in 0 blocks ==83619== still reachable: 56 bytes in 3 blocks ==83619== suppressed: 700,725 bytes in 9,375 blocks ==83619== Reachable blocks (those to which a pointer was found) are not shown. ==83619== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==83619== ==83619== For lists of detected and suppressed errors, rerun with: -s ==83619== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)