==187444== Memcheck, a memory error detector ==187444== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==187444== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==187444== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==187444== Parent PID: 185805 ==187444== ==187444== ==187444== FILE DESCRIPTORS: 9 open (3 std) at exit. ==187444== Open file descriptor 12: ==187444== at 0xD2E722D: pipe (pipe.c:29) ==187444== by 0x18AEF07D: ??? ==187444== by 0x140A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==187444== by 0x10572418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==187444== by 0x1050BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==187444== by 0xF202D38: PetscInitialize (pinit.c:924) ==187444== by 0xCEEF69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==187444== by 0xCEEF6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==187444== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==187444== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==187444== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==187444== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==187444== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==187444== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==187444== ==187444== Open file descriptor 8: /dev/shm/open_mpi.0000 ==187444== at 0xD2EBBCC: __open_nocancel (open64_nocancel.c:39) ==187444== by 0xD26FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==187444== by 0xCF27822: ??? ==187444== by 0xCF2796F: ??? ==187444== by 0x1414E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==187444== by 0x1414E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==187444== by 0x14104922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==187444== by 0x140A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==187444== by 0x10572418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==187444== by 0x1050BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==187444== by 0xF202D38: PetscInitialize (pinit.c:924) ==187444== by 0xCEEF69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==187444== by 0xCEEF6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==187444== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==187444== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==187444== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==187444== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==187444== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==187444== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==187444== ==187444== Open file descriptor 115: ==187444== ==187444== ==187444== Open file descriptor 111: ==187444== ==187444== ==187444== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==187444== ==187444== ==187444== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==187444== ==187444== ==187444== ==187444== HEAP SUMMARY: ==187444== in use at exit: 700,738 bytes in 9,377 blocks ==187444== total heap usage: 60,166 allocs, 50,789 frees, 1,354,331,460 bytes allocated ==187444== ==187444== LEAK SUMMARY: ==187444== definitely lost: 0 bytes in 0 blocks ==187444== indirectly lost: 0 bytes in 0 blocks ==187444== possibly lost: 0 bytes in 0 blocks ==187444== still reachable: 24 bytes in 2 blocks ==187444== suppressed: 700,714 bytes in 9,375 blocks ==187444== Reachable blocks (those to which a pointer was found) are not shown. ==187444== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==187444== ==187444== For lists of detected and suppressed errors, rerun with: -s ==187444== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)