==445407== Memcheck, a memory error detector ==445407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==445407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==445407== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==445407== Parent PID: 443847 ==445407== ==445407== ==445407== FILE DESCRIPTORS: 9 open (3 std) at exit. ==445407== Open file descriptor 12: ==445407== at 0xE71C22D: pipe (pipe.c:29) ==445407== by 0x18AEF07D: ??? ==445407== by 0x130914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==445407== by 0xE36B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445407== by 0xE304D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445407== by 0xCFFBD38: PetscInitialize (pinit.c:924) ==445407== by 0xCE6D69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==445407== by 0xCE6D6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==445407== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==445407== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==445407== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==445407== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==445407== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==445407== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==445407== ==445407== Open file descriptor 8: /dev/shm/open_mpi.0000 ==445407== at 0xE720BCC: __open_nocancel (open64_nocancel.c:39) ==445407== by 0xE6A4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==445407== by 0xCEA5822: ??? ==445407== by 0xCEA596F: ??? ==445407== by 0x131366DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445407== by 0x13136938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445407== by 0x130EC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445407== by 0x130912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==445407== by 0xE36B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445407== by 0xE304D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445407== by 0xCFFBD38: PetscInitialize (pinit.c:924) ==445407== by 0xCE6D69F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==445407== by 0xCE6D6ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==445407== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==445407== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==445407== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==445407== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==445407== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==445407== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==445407== ==445407== Open file descriptor 116: ==445407== ==445407== ==445407== Open file descriptor 112: ==445407== ==445407== ==445407== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==445407== ==445407== ==445407== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==445407== ==445407== ==445407== ==445407== HEAP SUMMARY: ==445407== in use at exit: 700,738 bytes in 9,377 blocks ==445407== total heap usage: 167,880 allocs, 158,503 frees, 1,364,670,552 bytes allocated ==445407== ==445407== LEAK SUMMARY: ==445407== definitely lost: 0 bytes in 0 blocks ==445407== indirectly lost: 0 bytes in 0 blocks ==445407== possibly lost: 0 bytes in 0 blocks ==445407== still reachable: 24 bytes in 2 blocks ==445407== suppressed: 700,714 bytes in 9,375 blocks ==445407== Reachable blocks (those to which a pointer was found) are not shown. ==445407== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==445407== ==445407== For lists of detected and suppressed errors, rerun with: -s ==445407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)