==445618== Memcheck, a memory error detector ==445618== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==445618== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==445618== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==445618== Parent PID: 443847 ==445618== ==445618== ==445618== FILE DESCRIPTORS: 9 open (3 std) at exit. ==445618== Open file descriptor 12: ==445618== at 0xEC2D22D: pipe (pipe.c:29) ==445618== by 0x18AF107D: ??? ==445618== by 0x140F24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==445618== by 0x108B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445618== by 0x10852D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445618== by 0xF547D38: PetscInitialize (pinit.c:924) ==445618== by 0xE4F069F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==445618== by 0xE4F06ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==445618== by 0x2D5D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==445618== by 0x2CBBE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==445618== by 0x2D0166: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==445618== by 0x2D0061: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==445618== by 0x2D0675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==445618== by 0x2CA3A0: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==445618== ==445618== Open file descriptor 8: /dev/shm/open_mpi.0000 ==445618== at 0xEC31BCC: __open_nocancel (open64_nocancel.c:39) ==445618== by 0xEBB5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==445618== by 0xE528822: ??? ==445618== by 0xE52896F: ??? ==445618== by 0x141976DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445618== by 0x14197938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445618== by 0x1414D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==445618== by 0x140F22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==445618== by 0x108B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445618== by 0x10852D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==445618== by 0xF547D38: PetscInitialize (pinit.c:924) ==445618== by 0xE4F069F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==445618== by 0xE4F06ED: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==445618== by 0x2D5D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==445618== by 0x2CBBE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==445618== by 0x2D0166: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==445618== by 0x2D0061: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==445618== by 0x2D0675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==445618== by 0x2CA3A0: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==445618== ==445618== Open file descriptor 116: ==445618== ==445618== ==445618== Open file descriptor 112: ==445618== ==445618== ==445618== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==445618== ==445618== ==445618== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==445618== ==445618== ==445618== ==445618== HEAP SUMMARY: ==445618== in use at exit: 700,770 bytes in 9,378 blocks ==445618== total heap usage: 58,724 allocs, 49,346 frees, 1,355,228,593 bytes allocated ==445618== ==445618== LEAK SUMMARY: ==445618== definitely lost: 0 bytes in 0 blocks ==445618== indirectly lost: 0 bytes in 0 blocks ==445618== possibly lost: 0 bytes in 0 blocks ==445618== still reachable: 56 bytes in 3 blocks ==445618== suppressed: 700,714 bytes in 9,375 blocks ==445618== Reachable blocks (those to which a pointer was found) are not shown. ==445618== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==445618== ==445618== For lists of detected and suppressed errors, rerun with: -s ==445618== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)