==552689== Memcheck, a memory error detector ==552689== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==552689== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==552689== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==552689== Parent PID: 550491 ==552689== ==552689== ==552689== FILE DESCRIPTORS: 9 open (3 std) at exit. ==552689== Open file descriptor 12: ==552689== at 0x102B122D: pipe (pipe.c:29) ==552689== by 0x18BE707D: ??? ==552689== by 0x1414E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==552689== by 0xFAD4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==552689== by 0xFA6DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==552689== by 0xE764D38: PetscInitialize (pinit.c:924) ==552689== by 0xE5D658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==552689== by 0xE5D65D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==552689== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==552689== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==552689== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==552689== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==552689== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==552689== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==552689== ==552689== Open file descriptor 8: /dev/shm/open_mpi.0000 ==552689== at 0x102B5BCC: __open_nocancel (open64_nocancel.c:39) ==552689== by 0x10239C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==552689== by 0xE60E822: ??? ==552689== by 0xE60E96F: ??? ==552689== by 0x141F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==552689== by 0x141F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==552689== by 0x141A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==552689== by 0x1414E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==552689== by 0xFAD4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==552689== by 0xFA6DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==552689== by 0xE764D38: PetscInitialize (pinit.c:924) ==552689== by 0xE5D658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==552689== by 0xE5D65D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==552689== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==552689== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==552689== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==552689== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==552689== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==552689== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==552689== ==552689== Open file descriptor 112: ==552689== ==552689== ==552689== Open file descriptor 109: ==552689== ==552689== ==552689== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==552689== ==552689== ==552689== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==552689== ==552689== ==552689== ==552689== HEAP SUMMARY: ==552689== in use at exit: 700,770 bytes in 9,378 blocks ==552689== total heap usage: 853,026 allocs, 843,648 frees, 1,518,004,118 bytes allocated ==552689== ==552689== LEAK SUMMARY: ==552689== definitely lost: 0 bytes in 0 blocks ==552689== indirectly lost: 0 bytes in 0 blocks ==552689== possibly lost: 0 bytes in 0 blocks ==552689== still reachable: 56 bytes in 3 blocks ==552689== suppressed: 700,714 bytes in 9,375 blocks ==552689== Reachable blocks (those to which a pointer was found) are not shown. ==552689== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==552689== ==552689== For lists of detected and suppressed errors, rerun with: -s ==552689== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)