==614838== Memcheck, a memory error detector ==614838== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==614838== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==614838== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==614838== Parent PID: 614575 ==614838== ==614838== ==614838== FILE DESCRIPTORS: 9 open (3 std) at exit. ==614838== Open file descriptor 12: ==614838== at 0x647522D: pipe (pipe.c:29) ==614838== by 0xAF5507D: ??? ==614838== by 0x8F754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==614838== by 0x666F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614838== by 0x6608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614838== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==614838== by 0x498A71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==614838== by 0x498A76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==614838== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==614838== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==614838== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==614838== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==614838== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==614838== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==614838== ==614838== Open file descriptor 8: /dev/shm/open_mpi.0000 ==614838== at 0x6479BCC: __open_nocancel (open64_nocancel.c:39) ==614838== by 0x63FDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==614838== by 0x5D40822: ??? ==614838== by 0x5D4096F: ??? ==614838== by 0x901A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614838== by 0x901A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614838== by 0x8FD0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614838== by 0x8F752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==614838== by 0x666F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614838== by 0x6608D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614838== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==614838== by 0x498A71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==614838== by 0x498A76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==614838== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==614838== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==614838== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==614838== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==614838== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==614838== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==614838== ==614838== Open file descriptor 114: ==614838== ==614838== ==614838== Open file descriptor 110: ==614838== ==614838== ==614838== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==614838== ==614838== ==614838== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==614838== ==614838== ==614838== ==614838== HEAP SUMMARY: ==614838== in use at exit: 700,770 bytes in 9,387 blocks ==614838== total heap usage: 60,664 allocs, 51,277 frees, 1,363,805,264 bytes allocated ==614838== ==614838== LEAK SUMMARY: ==614838== definitely lost: 0 bytes in 0 blocks ==614838== indirectly lost: 0 bytes in 0 blocks ==614838== possibly lost: 0 bytes in 0 blocks ==614838== still reachable: 24 bytes in 2 blocks ==614838== suppressed: 700,746 bytes in 9,385 blocks ==614838== Reachable blocks (those to which a pointer was found) are not shown. ==614838== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==614838== ==614838== For lists of detected and suppressed errors, rerun with: -s ==614838== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)