==614840== Memcheck, a memory error detector ==614840== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==614840== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==614840== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==614840== Parent PID: 614575 ==614840== ==614840== Warning: invalid file descriptor -1 in syscall close() ==614840== ==614840== FILE DESCRIPTORS: 9 open (3 std) at exit. ==614840== Open file descriptor 12: ==614840== at 0x65AC22D: pipe (pipe.c:29) ==614840== by 0xAF5507D: ??? ==614840== by 0x8F754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==614840== by 0x61FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614840== by 0x6196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614840== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==614840== by 0x498A71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==614840== by 0x498A76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==614840== by 0x12685C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==614840== by 0x12012F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==614840== by 0x12322E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==614840== by 0x1230CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==614840== by 0x123765: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==614840== by 0x11E460: main (TestHdf5DataWriter.cpp:19) ==614840== ==614840== Open file descriptor 8: /dev/shm/open_mpi.0000 ==614840== at 0x65B0BCC: __open_nocancel (open64_nocancel.c:39) ==614840== by 0x6534C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==614840== by 0x5D40822: ??? ==614840== by 0x5D4096F: ??? ==614840== by 0x901A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614840== by 0x901A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614840== by 0x8FD0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==614840== by 0x8F752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==614840== by 0x61FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614840== by 0x6196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==614840== by 0x4AB6D38: PetscInitialize (pinit.c:924) ==614840== by 0x498A71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==614840== by 0x498A76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==614840== by 0x12685C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==614840== by 0x12012F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==614840== by 0x12322E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==614840== by 0x1230CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==614840== by 0x123765: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==614840== by 0x11E460: main (TestHdf5DataWriter.cpp:19) ==614840== ==614840== Open file descriptor 114: ==614840== ==614840== ==614840== Open file descriptor 110: ==614840== ==614840== ==614840== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==614840== ==614840== ==614840== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==614840== ==614840== ==614840== ==614840== HEAP SUMMARY: ==614840== in use at exit: 700,770 bytes in 9,387 blocks ==614840== total heap usage: 116,010 allocs, 106,623 frees, 1,427,443,202 bytes allocated ==614840== ==614840== LEAK SUMMARY: ==614840== definitely lost: 0 bytes in 0 blocks ==614840== indirectly lost: 0 bytes in 0 blocks ==614840== possibly lost: 0 bytes in 0 blocks ==614840== still reachable: 24 bytes in 2 blocks ==614840== suppressed: 700,746 bytes in 9,385 blocks ==614840== Reachable blocks (those to which a pointer was found) are not shown. ==614840== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==614840== ==614840== For lists of detected and suppressed errors, rerun with: -s ==614840== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)