==686477== Memcheck, a memory error detector ==686477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==686477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==686477== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==686477== Parent PID: 684113 ==686477== ==686477== ==686477== FILE DESCRIPTORS: 9 open (3 std) at exit. ==686477== Open file descriptor 12: ==686477== at 0xECD222D: pipe (pipe.c:29) ==686477== by 0x18AF107D: ??? ==686477== by 0x140F24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==686477== by 0x109A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686477== by 0x10939D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686477== by 0xF630D38: PetscInitialize (pinit.c:924) ==686477== by 0xE4F071D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==686477== by 0xE4F076B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==686477== by 0x13D1CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==686477== by 0x136A5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==686477== by 0x1393EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==686477== by 0x1392E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==686477== by 0x1398F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==686477== by 0x135260: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==686477== ==686477== Open file descriptor 8: /dev/shm/open_mpi.0000 ==686477== at 0xECD6BCC: __open_nocancel (open64_nocancel.c:39) ==686477== by 0xEC5AC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==686477== by 0xE528822: ??? ==686477== by 0xE52896F: ??? ==686477== by 0x141976DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686477== by 0x14197938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686477== by 0x1414D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686477== by 0x140F22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==686477== by 0x109A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686477== by 0x10939D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686477== by 0xF630D38: PetscInitialize (pinit.c:924) ==686477== by 0xE4F071D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==686477== by 0xE4F076B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==686477== by 0x13D1CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==686477== by 0x136A5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==686477== by 0x1393EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==686477== by 0x1392E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==686477== by 0x1398F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==686477== by 0x135260: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==686477== ==686477== Open file descriptor 114: ==686477== ==686477== ==686477== Open file descriptor 110: ==686477== ==686477== ==686477== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==686477== ==686477== ==686477== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==686477== ==686477== ==686477== ==686477== HEAP SUMMARY: ==686477== in use at exit: 700,702 bytes in 9,374 blocks ==686477== total heap usage: 6,672,531 allocs, 6,663,157 frees, 9,009,518,602 bytes allocated ==686477== ==686477== LEAK SUMMARY: ==686477== definitely lost: 0 bytes in 0 blocks ==686477== indirectly lost: 0 bytes in 0 blocks ==686477== possibly lost: 0 bytes in 0 blocks ==686477== still reachable: 56 bytes in 3 blocks ==686477== suppressed: 700,646 bytes in 9,371 blocks ==686477== Reachable blocks (those to which a pointer was found) are not shown. ==686477== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==686477== ==686477== For lists of detected and suppressed errors, rerun with: -s ==686477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)