==932768== Memcheck, a memory error detector ==932768== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==932768== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==932768== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==932768== Parent PID: 931175 ==932768== ==932768== ==932768== FILE DESCRIPTORS: 9 open (3 std) at exit. ==932768== Open file descriptor 12: ==932768== at 0xD2B422D: pipe (pipe.c:29) ==932768== by 0x18A6E07D: ??? ==932768== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==932768== by 0x10511418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==932768== by 0x104AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==932768== by 0xF1A1D38: PetscInitialize (pinit.c:924) ==932768== by 0xCEBF1E9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==932768== by 0xCEBF237: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==932768== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==932768== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==932768== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==932768== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==932768== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==932768== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==932768== ==932768== Open file descriptor 8: /dev/shm/open_mpi.0000 ==932768== at 0xD2B8BCC: __open_nocancel (open64_nocancel.c:39) ==932768== by 0xD23CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==932768== by 0xCEF4822: ??? ==932768== by 0xCEF496F: ??? ==932768== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==932768== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==932768== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==932768== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==932768== by 0x10511418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==932768== by 0x104AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==932768== by 0xF1A1D38: PetscInitialize (pinit.c:924) ==932768== by 0xCEBF1E9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==932768== by 0xCEBF237: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==932768== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==932768== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==932768== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==932768== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==932768== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==932768== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==932768== ==932768== Open file descriptor 114: ==932768== ==932768== ==932768== Open file descriptor 110: ==932768== ==932768== ==932768== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==932768== ==932768== ==932768== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==932768== ==932768== ==932768== ==932768== HEAP SUMMARY: ==932768== in use at exit: 700,722 bytes in 9,377 blocks ==932768== total heap usage: 60,197 allocs, 50,820 frees, 1,354,349,350 bytes allocated ==932768== ==932768== LEAK SUMMARY: ==932768== definitely lost: 0 bytes in 0 blocks ==932768== indirectly lost: 0 bytes in 0 blocks ==932768== possibly lost: 0 bytes in 0 blocks ==932768== still reachable: 24 bytes in 2 blocks ==932768== suppressed: 700,698 bytes in 9,375 blocks ==932768== Reachable blocks (those to which a pointer was found) are not shown. ==932768== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==932768== ==932768== For lists of detected and suppressed errors, rerun with: -s ==932768== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40)