==1071945== Memcheck, a memory error detector ==1071945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1071945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1071945== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1071945== Parent PID: 1053583 ==1071945== ==1071945== ==1071945== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1071945== Open file descriptor 12: ==1071945== at 0x1018922D: pipe (pipe.c:29) ==1071945== by 0x18AEF07D: ??? ==1071945== by 0x140544CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1071945== by 0xF9AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1071945== by 0xF945D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1071945== by 0xE61CD38: PetscInitialize (pinit.c:924) ==1071945== by 0xE4F071D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1071945== by 0xE4F076B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1071945== by 0x13334F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1071945== by 0x12CDCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1071945== by 0x12F620: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1071945== by 0x12F4C1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1071945== by 0x12FB57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1071945== by 0x12B100: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1071945== ==1071945== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1071945== at 0x1018DBCC: __open_nocancel (open64_nocancel.c:39) ==1071945== by 0x10111C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1071945== by 0xF8A6822: ??? ==1071945== by 0xF8A696F: ??? ==1071945== by 0x140F96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1071945== by 0x140F9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1071945== by 0x140AF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1071945== by 0x140542DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1071945== by 0xF9AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1071945== by 0xF945D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1071945== by 0xE61CD38: PetscInitialize (pinit.c:924) ==1071945== by 0xE4F071D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1071945== by 0xE4F076B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1071945== by 0x13334F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1071945== by 0x12CDCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1071945== by 0x12F620: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1071945== by 0x12F4C1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1071945== by 0x12FB57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1071945== by 0x12B100: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1071945== ==1071945== Open file descriptor 114: ==1071945== ==1071945== ==1071945== Open file descriptor 110: ==1071945== ==1071945== ==1071945== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1071945== ==1071945== ==1071945== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1071945== ==1071945== ==1071945== ==1071945== HEAP SUMMARY: ==1071945== in use at exit: 700,775 bytes in 9,378 blocks ==1071945== total heap usage: 1,399,221 allocs, 1,389,843 frees, 1,413,247,011 bytes allocated ==1071945== ==1071945== LEAK SUMMARY: ==1071945== definitely lost: 0 bytes in 0 blocks ==1071945== indirectly lost: 0 bytes in 0 blocks ==1071945== possibly lost: 0 bytes in 0 blocks ==1071945== still reachable: 56 bytes in 3 blocks ==1071945== suppressed: 700,719 bytes in 9,375 blocks ==1071945== Reachable blocks (those to which a pointer was found) are not shown. ==1071945== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1071945== ==1071945== For lists of detected and suppressed errors, rerun with: -s ==1071945== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)