==1116332== Memcheck, a memory error detector ==1116332== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1116332== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1116332== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1116332== Parent PID: 1114737 ==1116332== ==1116332== ==1116332== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1116332== Open file descriptor 12: ==1116332== at 0xE6F822D: pipe (pipe.c:29) ==1116332== by 0x18A6E07D: ??? ==1116332== by 0x130104CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116332== by 0xE347418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116332== by 0xE2E0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116332== by 0xCFD7D38: PetscInitialize (pinit.c:924) ==1116332== by 0xCE4C20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116332== by 0xCE4C25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116332== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1116332== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116332== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116332== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116332== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116332== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1116332== ==1116332== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1116332== at 0xE6FCBCC: __open_nocancel (open64_nocancel.c:39) ==1116332== by 0xE680C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1116332== by 0xCE81822: ??? ==1116332== by 0xCE8196F: ??? ==1116332== by 0x130B56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116332== by 0x130B5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116332== by 0x1306B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116332== by 0x130102DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116332== by 0xE347418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116332== by 0xE2E0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116332== by 0xCFD7D38: PetscInitialize (pinit.c:924) ==1116332== by 0xCE4C20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116332== by 0xCE4C25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116332== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1116332== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116332== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116332== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116332== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116332== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1116332== ==1116332== Open file descriptor 114: ==1116332== ==1116332== ==1116332== Open file descriptor 110: ==1116332== ==1116332== ==1116332== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1116332== ==1116332== ==1116332== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1116332== ==1116332== ==1116332== ==1116332== HEAP SUMMARY: ==1116332== in use at exit: 700,727 bytes in 9,377 blocks ==1116332== total heap usage: 167,885 allocs, 158,508 frees, 1,364,677,801 bytes allocated ==1116332== ==1116332== LEAK SUMMARY: ==1116332== definitely lost: 0 bytes in 0 blocks ==1116332== indirectly lost: 0 bytes in 0 blocks ==1116332== possibly lost: 0 bytes in 0 blocks ==1116332== still reachable: 24 bytes in 2 blocks ==1116332== suppressed: 700,703 bytes in 9,375 blocks ==1116332== Reachable blocks (those to which a pointer was found) are not shown. ==1116332== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1116332== ==1116332== For lists of detected and suppressed errors, rerun with: -s ==1116332== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)