==1116489== Memcheck, a memory error detector ==1116489== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1116489== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1116489== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info ==1116489== Parent PID: 1114737 ==1116489== ==1116489== ==1116489== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1116489== Open file descriptor 12: ==1116489== at 0x1015722D: pipe (pipe.c:29) ==1116489== by 0x18A6E07D: ??? ==1116489== by 0x13FD14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116489== by 0xF97A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116489== by 0xF913D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116489== by 0xE5EAD38: PetscInitialize (pinit.c:924) ==1116489== by 0xE4C120F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116489== by 0xE4C125D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116489== by 0x15A047: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1116489== by 0x152305: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116489== by 0x1557B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116489== by 0x155652: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116489== by 0x155CE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116489== by 0x150635: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==1116489== ==1116489== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1116489== at 0x1015BBCC: __open_nocancel (open64_nocancel.c:39) ==1116489== by 0x100DFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1116489== by 0xF874822: ??? ==1116489== by 0xF87496F: ??? ==1116489== by 0x140786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116489== by 0x14078938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116489== by 0x1402E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116489== by 0x13FD12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116489== by 0xF97A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116489== by 0xF913D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116489== by 0xE5EAD38: PetscInitialize (pinit.c:924) ==1116489== by 0xE4C120F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116489== by 0xE4C125D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116489== by 0x15A047: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1116489== by 0x152305: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116489== by 0x1557B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116489== by 0x155652: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116489== by 0x155CE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116489== by 0x150635: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==1116489== ==1116489== Open file descriptor 114: ==1116489== ==1116489== ==1116489== Open file descriptor 110: ==1116489== ==1116489== ==1116489== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt ==1116489== ==1116489== ==1116489== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1116489== ==1116489== ==1116489== ==1116489== HEAP SUMMARY: ==1116489== in use at exit: 700,759 bytes in 9,378 blocks ==1116489== total heap usage: 224,137 allocs, 214,759 frees, 1,378,870,685 bytes allocated ==1116489== ==1116489== LEAK SUMMARY: ==1116489== definitely lost: 0 bytes in 0 blocks ==1116489== indirectly lost: 0 bytes in 0 blocks ==1116489== possibly lost: 0 bytes in 0 blocks ==1116489== still reachable: 56 bytes in 3 blocks ==1116489== suppressed: 700,703 bytes in 9,375 blocks ==1116489== Reachable blocks (those to which a pointer was found) are not shown. ==1116489== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1116489== ==1116489== For lists of detected and suppressed errors, rerun with: -s ==1116489== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)