==1137514== Memcheck, a memory error detector ==1137514== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1137514== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1137514== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1137514== Parent PID: 1114737 ==1137514== ==1137514== Warning: invalid file descriptor -1 in syscall close() ==1137514== ==1137514== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1137514== Open file descriptor 12: ==1137514== at 0xBD5D22D: pipe (pipe.c:29) ==1137514== by 0x13F8507D: ??? ==1137514== by 0xFC464CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1137514== by 0xB64D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1137514== by 0xB5E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1137514== by 0x9F28D38: PetscInitialize (pinit.c:924) ==1137514== by 0x9D9B20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1137514== by 0x9D9B25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1137514== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1137514== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1137514== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1137514== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1137514== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1137514== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1137514== ==1137514== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1137514== at 0xBD61BCC: __open_nocancel (open64_nocancel.c:39) ==1137514== by 0xBCE5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1137514== by 0x9DD0822: ??? ==1137514== by 0x9DD096F: ??? ==1137514== by 0xFCEB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1137514== by 0xFCEB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1137514== by 0xFCA1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1137514== by 0xFC462DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1137514== by 0xB64D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1137514== by 0xB5E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1137514== by 0x9F28D38: PetscInitialize (pinit.c:924) ==1137514== by 0x9D9B20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1137514== by 0x9D9B25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1137514== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1137514== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1137514== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1137514== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1137514== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1137514== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1137514== ==1137514== Open file descriptor 114: ==1137514== ==1137514== ==1137514== Open file descriptor 110: ==1137514== ==1137514== ==1137514== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1137514== ==1137514== ==1137514== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1137514== ==1137514== ==1137514== ==1137514== HEAP SUMMARY: ==1137514== in use at exit: 701,152 bytes in 9,383 blocks ==1137514== total heap usage: 6,629,708 allocs, 6,620,325 frees, 4,035,830,312 bytes allocated ==1137514== ==1137514== LEAK SUMMARY: ==1137514== definitely lost: 0 bytes in 0 blocks ==1137514== indirectly lost: 0 bytes in 0 blocks ==1137514== possibly lost: 0 bytes in 0 blocks ==1137514== still reachable: 24 bytes in 2 blocks ==1137514== suppressed: 701,128 bytes in 9,381 blocks ==1137514== Reachable blocks (those to which a pointer was found) are not shown. ==1137514== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1137514== ==1137514== For lists of detected and suppressed errors, rerun with: -s ==1137514== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)