==1116352== Memcheck, a memory error detector ==1116352== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1116352== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1116352== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==1116352== Parent PID: 1114737 ==1116352== ==1116352== ==1116352== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1116352== Open file descriptor 12: ==1116352== at 0xD2B422D: pipe (pipe.c:29) ==1116352== by 0x18A6E07D: ??? ==1116352== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116352== by 0x10511418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116352== by 0x104AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116352== by 0xF1A1D38: PetscInitialize (pinit.c:924) ==1116352== by 0xCEBF20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116352== by 0xCEBF25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116352== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1116352== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116352== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116352== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116352== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116352== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1116352== ==1116352== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1116352== at 0xD2B8BCC: __open_nocancel (open64_nocancel.c:39) ==1116352== by 0xD23CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1116352== by 0xCEF4822: ??? ==1116352== by 0xCEF496F: ??? ==1116352== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116352== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116352== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1116352== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1116352== by 0x10511418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116352== by 0x104AAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1116352== by 0xF1A1D38: PetscInitialize (pinit.c:924) ==1116352== by 0xCEBF20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1116352== by 0xCEBF25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1116352== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1116352== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1116352== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1116352== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1116352== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1116352== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1116352== ==1116352== Open file descriptor 114: ==1116352== ==1116352== ==1116352== Open file descriptor 110: ==1116352== ==1116352== ==1116352== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==1116352== ==1116352== ==1116352== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1116352== ==1116352== ==1116352== ==1116352== HEAP SUMMARY: ==1116352== in use at exit: 700,727 bytes in 9,377 blocks ==1116352== total heap usage: 60,196 allocs, 50,819 frees, 1,354,350,036 bytes allocated ==1116352== ==1116352== LEAK SUMMARY: ==1116352== definitely lost: 0 bytes in 0 blocks ==1116352== indirectly lost: 0 bytes in 0 blocks ==1116352== possibly lost: 0 bytes in 0 blocks ==1116352== still reachable: 24 bytes in 2 blocks ==1116352== suppressed: 700,703 bytes in 9,375 blocks ==1116352== Reachable blocks (those to which a pointer was found) are not shown. ==1116352== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1116352== ==1116352== For lists of detected and suppressed errors, rerun with: -s ==1116352== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)